Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1164 ATGGGTAAGATTCTGAGAGAAACCGCGAGGCCGTCCTTTACTTGTTCGTCGGCGTCACCGTCGTCAGCGCCACCGGCGACGACGTCGTCGACGTCGGTGACCGACACCGTGAGGGGATCGCACCGGTTCAAGATCACGGGGTATGCTCTGTCGAAGGGGATTGGGATTGGGAAGTATATAGCGTCTGATATATTTTCGGTGGGAGGGTACGATTGGGCGATCTATTTTTATCCTGATGGGAAGAGCGTGGAGGACAATGCTACGTACGTTTCTCTCTTCATCGCGCTGGCTAGCGAGGGGGCAGATGTTAGAGCGCTTTTTGAGTTGACCCTTTTGGATCAGAGTGGGAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACCCTCGAGAGTGGACCTTACACGTTAAAATACCGTGGTAGCATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAGACATCAGATTACCTTAAAGACGATTGCCTTAGCGTTAATTGCAGTGTTGGTGTAGTGAAATCACACACAGAGGGCCCTAAAATTTATAAAATTCCAATTATGCCTTCTAACATTGGTCAGCAACTTGGGAAGCTTTTAGAAAGTGGGAAAGGCAGTGATGTGAGTTTTGAAGTGAATGGAGAAGTTTTTGCTGCTCATAAATTGGTACTGGCTGCTCGCTCACCAGTTTTCAGGGCCCAACTTTTTGGTCCTATGAAAGATCAGAATACCCGTTGTATAAAAATTGAAGACATGGAGGCTCCAGTTTTCAAGGCATTGCTTCATGTTATATATTATGACTCACTACCTGACATGCAAGAGCTTACTGGGTTGAACTCGAAAGGGGCTACTACCTTGATGGCTCAGCATCTGCTTGCAGCTGCTGATCGGTATGGCTTAGAGAGAGTTAGGCTGATGTGTGAAACAAATCTCTGTGAAGATGTTGCAATAAACACTGTTGCTACGACTCTGGCCTTGGCAGAGCAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTGAAATTCGTTGCACAGCCTGAAAATCTTAGAGTTTTAAGGAGATGCGTGAGAGGGGAAAAGGAAGAGGAGCTTCTAGAAGGGATGCCCAAGGAGTACTATGACGATGAATGGCAAGCCCAGCAACGAAAGAAGACCAAGGAGTTGCAACGAAGACGCAGACAGGAAGAAGAGGAAGAAGAAAGAAAGATGGGAGAGTATCGTGAAATTGGCTTACGGTTGAAGGAATACCCAGAAGAAGATGTCATTAAAGCAAGGAAACTAGTTGCAAGCTTTCTCAAGGTTCCTGAAGAAGTGGAAGAGAGAATTGAGGAAGCTGCTGAGAAAGGAGAGCTTACTGAACTTGTTTTAATGGTCATATGGAATCGGCTTGATCTTGCTCGGCGTGATGAAGAAAAGGATGCCATTAGAAGTCTGGATCTGTTATACAGAAGGGCTGAGCATCACGGGCCATTGAGACCATCCCTTGAAGATGATGAGACCCTTTTAAGGGTGGACTTCGTAAGGGAGGTGGATGAATTGCTGCGAGAGGTTCGTTCTGAAAAGAGTGAAGTACAAAATGAATCAGGGTTTGATCTTGAATCTGTTGCAAATAGACTGAAACAACAGGAGAAGCAACAAACAATACGCCAAGTTGAAGCTCTGCTAGATTTAGCCATGGGTTTGAAATGGTAA 1698 0.4605 MGKILRETARPSFTCSSASPSSAPPATTSSTSVTDTVRGSHRFKITGYALSKGIGIGKYIASDIFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASEGADVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVKSHTEGPKIYKIPIMPSNIGQQLGKLLESGKGSDVSFEVNGEVFAAHKLVLAARSPVFRAQLFGPMKDQNTRCIKIEDMEAPVFKALLHVIYYDSLPDMQELTGLNSKGATTLMAQHLLAAADRYGLERVRLMCETNLCEDVAINTVATTLALAEQHHCFQLKAVCLKFVAQPENLRVLRRCVRGEKEEELLEGMPKEYYDDEWQAQQRKKTKELQRRRRQEEEEEERKMGEYREIGLRLKEYPEEDVIKARKLVASFLKVPEEVEERIEEAAEKGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRAEHHGPLRPSLEDDETLLRVDFVREVDELLREVRSEKSEVQNESGFDLESVANRLKQQEKQQTIRQVEALLDLAMGLKW* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1164 565 CDD BTB_POZ_BPM_plant 194 314 - -
Vra8g1164 565 ProSiteProfiles BTB domain profile. 208 275 IPR000210 GO:0005515
Vra8g1164 565 Pfam BTB/POZ domain 199 315 IPR000210 GO:0005515
Vra8g1164 565 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 37 176 IPR008974 GO:0005515
Vra8g1164 565 SUPERFAMILY TRAF domain-like 35 174 - -
Vra8g1164 565 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 354 IPR045005 GO:0016567
Vra8g1164 565 Coils Coil 509 529 - -
Vra8g1164 565 SMART BTB_4 208 317 IPR000210 GO:0005515
Vra8g1164 565 Gene3D Potassium Channel Kv1.1; Chain A 177 347 IPR011333 -
Vra8g1164 565 SUPERFAMILY POZ domain 185 315 IPR011333 -
Vra8g1164 565 Coils Coil 380 407 - -
Vra8g1164 565 CDD MATH 39 172 IPR002083 GO:0005515
Vra8g1164 565 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 20 354 - -
Vra8g1164 565 MobiDBLite consensus disorder prediction 10 34 - -
Vra8g1164 565 ProSiteProfiles MATH/TRAF domain profile. 38 172 IPR002083 GO:0005515
Vra8g1164 565 SMART math_3 43 155 IPR002083 GO:0005515
Vra8g1164 565 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1164 Vra-Chr8 26656011 26676001 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1164 K10523 - gmx:100811065 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1164 8 26656011 26676001 Vra8g1164 8 26656011 26676001 ECH
Vra3g0080 3 859159 864177 Vra8g1164 8 26656011 26676001 PCT