Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0080 ATGGGTAAGATTCTCCGAGAAACCGCCAAGCCGTCGGCGAATTCTTCATCGGCGTCCCCCTCTTCGGCGGCGCCCGCCACCACGTCTTCCACGTCGGTGACGGAGACCGTGAGAGGCTCGCACCAGTTCAAGATCACGGGCTACTCCCTCTCCAAGGGGATCGGGATTGGAAAGTACATGGCCTCCGACGTGTTTTCCGTTGGAGGGTACGATTGGGCGATTTATTTCTACCCCGATGGGAAGAGCGTGGAGGACAATGCGACCTACGTGTCGCTCTTCATCGCTCTGGCCAGCGACGGCACCGACGTTAGGGCACTTTTCGAGTTAACCCTTTTGGATCAGAGTGGCAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACACTCGAAAGCGGGCCTTACACGTTAAAATACCGCGGTAGTATGTGGGGTTACAAAAGATTTTTTAAGAGAACAGCTCTAGAAACATCGGACTACCTTAAAGATGATTGTCTCTCTGTGAATTGTAGTGTTGGTGTTGTGAGGTCACGTACGGAAGGTCCTAAAATCTATACGATAGCAATACCACCTTCTAGCATTGGCCATCAATTTGGGCATCTACTTGAAAGTCGTAAAGGAAGTGATGTGAATTTTGAAGTGAACGGAGAAATTTTTTCTGCTCATAAATTGGTATTAGCAGCTCGGTCACCTGTTTTTAGAGCACAGCTTTTTGGTCCTATGAAAGATCAGAATACCCATTGTATTAAAGTTGAAGACATGGAGGCTCCAGTTTTCAAGGCATTGCTTCATTTTATATACTGGGACTCACTACCAGATATGCATGAGCTTACTGGCCTGAACTCAAAGTGGGCATCAACCTTGATGGCTCAGCATCTTCTAGCAGCAGCTGATCGATATGGCCTAGAGAGGCTTAGGCTGACGTGTGAGGCAAGTCTTTGTGAAGATGTAGCAATTAATACTGTGGCTACAACTCTAGCCTTGGCAGAGCAGCACCATTGTTTCCAGCTGAAAGCTGTTTGTCTCAAGTTTATCGCTACATCTGAAAATCTTAGAGCTGTGATGCAAACTGACGGATTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTCTGACTGAGCTATTGGAGTACGTGGCCAGATTTACTGAGCATTCGGACTTCATGTGCAAGCATAGGAATGAAGCACTACTTGATGGCAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGCTCTAG 1236 0.4773 MGKILRETAKPSANSSSASPSSAAPATTSSTSVTETVRGSHQFKITGYSLSKGIGIGKYMASDVFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASDGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYTIAIPPSSIGHQFGHLLESRKGSDVNFEVNGEIFSAHKLVLAARSPVFRAQLFGPMKDQNTHCIKVEDMEAPVFKALLHFIYWDSLPDMHELTGLNSKWASTLMAQHLLAAADRYGLERLRLTCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEALLDGSDINGRRVKQRL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0080 411 CDD BTB_POZ_BPM_plant 194 314 - -
Vra3g0080 411 MobiDBLite consensus disorder prediction 1 35 - -
Vra3g0080 411 CDD BACK_AtBPM-like 314 377 IPR034090 -
Vra3g0080 411 ProSiteProfiles BTB domain profile. 208 267 IPR000210 GO:0005515
Vra3g0080 411 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 390 IPR045005 GO:0016567
Vra3g0080 411 SUPERFAMILY TRAF domain-like 35 174 - -
Vra3g0080 411 SUPERFAMILY POZ domain 185 315 IPR011333 -
Vra3g0080 411 ProSiteProfiles MATH/TRAF domain profile. 38 172 IPR002083 GO:0005515
Vra3g0080 411 Gene3D - 317 393 - -
Vra3g0080 411 SMART BTB_4 208 317 IPR000210 GO:0005515
Vra3g0080 411 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 20 390 - -
Vra3g0080 411 Pfam BTB/POZ domain 200 315 IPR000210 GO:0005515
Vra3g0080 411 Gene3D Potassium Channel Kv1.1; Chain A 184 311 IPR011333 -
Vra3g0080 411 SMART math_3 43 155 IPR002083 GO:0005515
Vra3g0080 411 CDD MATH 39 172 IPR002083 GO:0005515
Vra3g0080 411 MobiDBLite consensus disorder prediction 9 35 - -
Vra3g0080 411 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 37 176 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0080 Vra-Chr3 859159 864177 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0080 K10523 - gmx:102668882 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0080 3 859159 864177 Vra3g0080 3 859159 864177 ECH
Vra3g0080 3 859159 864177 Vra8g1164 8 26656011 26676001 PCT