Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1159 ATGTTCTGCAAAACCAAAACCTACACTCTTTTCTACCATAACAATGCAAGAACTATATCAAGCCTCAAAGTAGTGTGGCGCAAGGACCCAACACTGGACCGAGCTATAGAGTACGACAAGCGTTACAAGCAATGTGCCCGCGTCGTCAAAGAAGTCCTCAACGAACCAGGCCAAGTCATTCCTCTACGCTACCTCGAGAAGCGCCGCGAAAGGATGCGCCTCAAGGTCAAAGCCGAAACCTTTATCAACCAAAACCCCGGTTTGTTCGATGTCTACTACAGTCGCATCAAACCCAAAACTGAACCGGTTCGCTTCATACGCCCCTCCGACCGCCTTCACTGCTTTCTCCAGGAAGAGCAACGGATTTTCTCCGAGAACGAACCCTTCATTGTCTCCAAGTTGTGTAAACTGTTAATGATGTCCAAGAACAAGTTTATCAGTGCTGATAAGTTGCTTCACGTGAAGAGGGAGTTCGGGTTCCCTAACGATTTTTTGGTTGATTTGGTTCCTCGATATCCGCAATATTTTAGGTTAACTGGGTCTCCTGGAGAGGGGAAATCGTTTCTTGAATTGGTTGATTGGAACCCCGAGTTTGCAAAATCTGTTATTGAGAAAAGAGCCGAGGAGGAGAGTGAGCGATTGGGGATTAGGGTTAGGCCTAATTTCAATGTGGAGCTACCGCCAGGGTTTGTGTTGAAGAAGGAGATGAGAGAGTGGGTTAGGGATTGGCTGGAGCTTGATTATGTGTCCCCTTATCAGGATGTGTCCCATTTGGACCAGGCTTCCAGAGAGATGGAGAAGAGATCTGTTGGAGTGTTCCATGAACTGCTTTCCCTTTCCTTGCATAAGAGGATTCCGGTTCCGATCCTTGGAAAGTTTTGCGATGACTATAGGTTTTCCAATGCGTTTTCCACCACTTTTACCAGGCATTCGGGGATATTCTATCTGTCCTTGAAAGGTGGAATTGAGACGGCAGTGCTGAGAGAAGCATACCAAGGTGAGGAGTTGATTGACCGTGATCCGTTGCTTCAGATAAAAGATAAATTTGTTGAGTTGTTGGAGGAGGGATGGCGGCAAAGAAAGGAACAATTGATGTTGAAGCAAGAAAGGATTAAGGAAGATATGGAGCTATTGGCCACGAAAGTTGGTGAATGA 1155 0.4632 MFCKTKTYTLFYHNNARTISSLKVVWRKDPTLDRAIEYDKRYKQCARVVKEVLNEPGQVIPLRYLEKRRERMRLKVKAETFINQNPGLFDVYYSRIKPKTEPVRFIRPSDRLHCFLQEEQRIFSENEPFIVSKLCKLLMMSKNKFISADKLLHVKREFGFPNDFLVDLVPRYPQYFRLTGSPGEGKSFLELVDWNPEFAKSVIEKRAEEESERLGIRVRPNFNVELPPGFVLKKEMREWVRDWLELDYVSPYQDVSHLDQASREMEKRSVGVFHELLSLSLHKRIPVPILGKFCDDYRFSNAFSTTFTRHSGIFYLSLKGGIETAVLREAYQGEELIDRDPLLQIKDKFVELLEEGWRQRKEQLMLKQERIKEDMELLATKVGE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1159 384 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 10 379 - -
Vra8g1159 384 Pfam Plant organelle RNA recognition domain 28 357 IPR021099 GO:0003723
Vra8g1159 384 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 10 379 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1159 Vra-Chr8 26597191 26599842 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1159 - - gmx:100778092 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1159 8 26597191 26599842 Vra8g1159 8 26597191 26599842 ECH
Vra3g0651 3 7037858 7042611 Vra8g1159 8 26597191 26599842 PCT