Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1147 ATGGCTAATACTACCAACTTTCTGCATCTCATTGCTCTCTTCCAACTTTTCTTCATTGCACCCTCTTTCGCTCAACAATCTTTCAGGCCCAAAGCCCTCGTTGTCCCCATTACAAAACATGCATCAACTCTCCAATACCTAACTCAAATCAACCAAAGAACTCCTCTTCTCCCCCTAAACCTTGTGCTTGACATCGGAGGCCAATTCCTCTGGGTCGACTGCGACACCAACTATGTCTCCTCCACTTACCGCCCTGCACGCTGCCGCTCCGCCCAGTGCTCCCTCGCCAGATCCTTCTCCTGCGGGGACTGCTTTTCCGCCCCCAGACCCGGCTGCAACAACAACACGTGCGGCCTCATCCCGGACAACACCATCACCCACACCGCTACCTCCGGCGAGCTTGCTGAAGATACCATCTCCGTCCAATCCACCAACGGCTTCAACCCCGGACGAAACGTCACCGTTTCCCGCTTCCTCTTCTCCTGCGCCCCCACCTTCTTACTCCAAGGTCTCGCCACTGGAGTCTCCGGCATGGCCGGTCTCGGCAGGACGAAAATCGCTCTTCCCTCACAGTTCGCTTCCGCGTTCAGCTTCCACAGGAAATTCGCCGTCTGCCTCTCCTCCTCAAAAGGCGTCGCTTTCTTCGGCGACGGCCCTTACGTTCTACTCCCCAACATTGACGCCGCTCAGTTACTCACCTTCACCCCTATGTTAGTCAACCCCGTCAGCACCGCTTCCGCTTTCTCCCAGGGAGAACCCTCCGCCGAGTATTTCATCGGCGTGAAATCCATCAGAATCGACGAAAAAGCTGTGCCCCTTAACACGACTTTGCTATCCATAAACAGCGAAGGCGTTGGCGGAACCAAGATCAGTTCCGTTAACCCCTACACCGAGTTGGAGGCTTCGATCTTCAAAGCAGTGACGGAGGCTTTTGTAAAAGCGTCTGCTGCGAGGAACATAACGAGGGTGGCTGGAGTGGCACCGTTTGAAGTGTGTTTCAGCAGTAAGAACGTGGTGGGCACTCGGTTAGGGGCGTCAGTGCCAACCATTGAGCTTGTTCTGCACAACCAGAAGACTATTTGGAGGATTTTCGGAGCGAACTCGATGGTGAGTGTGAGCGATGACGTGCTTTGTCTCGGATTTGTGAATGGTGGTGAGAAGCCGAGGACTTCGATTGTGATTGGTGGGTATCAACTTGAGAATAATCTCTTGCAGTTCGATTTGGCCGCTTCAAGGTTGGGTTTCACTTCTTTGCTCTTTGGAAGCCAAACTACATGCGCAAACTTCAACTTTACCTCCACTGTCTAA 1308 0.5329 MANTTNFLHLIALFQLFFIAPSFAQQSFRPKALVVPITKHASTLQYLTQINQRTPLLPLNLVLDIGGQFLWVDCDTNYVSSTYRPARCRSAQCSLARSFSCGDCFSAPRPGCNNNTCGLIPDNTITHTATSGELAEDTISVQSTNGFNPGRNVTVSRFLFSCAPTFLLQGLATGVSGMAGLGRTKIALPSQFASAFSFHRKFAVCLSSSKGVAFFGDGPYVLLPNIDAAQLLTFTPMLVNPVSTASAFSQGEPSAEYFIGVKSIRIDEKAVPLNTTLLSINSEGVGGTKISSVNPYTELEASIFKAVTEAFVKASAARNITRVAGVAPFEVCFSSKNVVGTRLGASVPTIELVLHNQKTIWRIFGANSMVSVSDDVLCLGFVNGGEKPRTSIVIGGYQLENNLLQFDLAASRLGFTSLLFGSQTTCANFNFTSTV* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1147 435 Pfam Xylanase inhibitor N-terminal 46 217 IPR032861 -
Vra8g1147 435 Gene3D Acid Proteases 218 433 IPR021109 -
Vra8g1147 435 PANTHER ASPARTYL PROTEASE-RELATED 11 434 IPR001461 GO:0004190|GO:0006508
Vra8g1147 435 Pfam Xylanase inhibitor C-terminal 256 416 IPR032799 -
Vra8g1147 435 SUPERFAMILY Acid proteases 37 426 IPR021109 -
Vra8g1147 435 ProSiteProfiles Peptidase family A1 domain profile. 46 416 IPR033121 -
Vra8g1147 435 Gene3D Acid Proteases 30 217 IPR021109 -
Vra8g1147 435 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 11 434 - -
Vra8g1147 435 CDD xylanase_inhibitor_I_like 51 419 IPR033868 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1147 Vra-Chr8 26481229 26482800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1147 33 417 Miscellaneous Gene Families AT1G77480 22.005 6.42e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1147 - - vun:114190071 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1147 8 26481229 26482800 Vra8g1147 8 26481229 26482800 ECH
Vra3g0090 3 975690 977258 Vra8g1147 8 26481229 26482800 PCT