Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1139 ATGAATTCAAGTGACTCCATCGATTGTCCAAAAACACACCGCGTTTCCATACCAACACCTCTCCAAATTTTCTCGTCTGTTCCTTGTTTTCCTGCAATGGTAGGCCCCTTCAGCGCCGGCGGCGATCGCAGGGTGGTTAGAGTCGCCATCGTAGGCGACGGTGGTACCGGAAAATCCACACTCGTTGCCGCAATGGCGTCGGAATCTTTCCCCGAGTCCGTTCCGCCCGTGCTCCCTCCCACTCGCCTGCCTCATAATCTCTATCCCGATTCCGTTCCTCTCACCCTCATTGACACACCTTCCAGCTTCGAAAAGCAAGGCGCGCGCAGTGAAGAATTGAAGCGAGCTGACACGGTGGTCTTAACCTATGCTTGCGACGAACCATTGAGCTTTGAGCGTTTGAGTACTTACTGGCTCCCTGAACTGCGGAAGTTGGAGGTGAAGGCACCTGTGATTGTAGTTGGCTGTAAGCTTGACCTTCGGAATGAAAATCAGCTAGTGAGCTTAGAGAGTCTCACAACAAATATCATGCAACAGTTCACAGAAATTGTCACTTGTGTTGAATGCTCTGCTGTTACACTTTTCCAGGTCCCAGAAGTTTTTTATTTTGCCCTAAAAGCAGTACTGCATCCAGTAGATCCATTGTTTGATTATAAAAGACATGGTTTGACAGATCCATGTGTGAGGGCTTTAAGAAGAATATTTATTCTATGCGATCAAGACATGGATGGTGCTCTCAATGATGAAGAGCTAAATGAGTTTCAGGTTAAATGCTTCAATGCAGCATTGCAGCCATCTGAAATAGTAAAAGTCAAATCGATTGTGCAGCAGAAAGTACCTGCTGGAGTCAACTCTGTTGGTCTTACCTTTCCAGGCTTTATTTATGTCAATAACATGTTTCTACAGAAAGGGCGAACAGAGACATTGTGGGCCGTTCTAAGAAAGTTTGGATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCAGTTCCATCGATGCATGCTTCTGATCAGAGTGTGGAGCTGACATGTGAAGCCGTAGAGTTTCTGAATGATATCTTTCAATTGTTAGATACAGATAAAGATCTAACTCTACGACCTGCCGAAGTTGATAACCTATTTGATACTGCTCCAGAAAGTCCATGGAACAATGCCCCATATAAGGATGCAGCAGAGAAAACTGATATGGGCTATATCTCTCTAAATGGATTTCTGTCTCAGTGGGCCCTCATGACATTACTTGATCCAAAACTTAGCTTGGCTAATTTGATTTACATTGGATATAAGGGTAATCCTGCTGCAGCACTCCATATCACTCGTAAAAGGTCATTAAATCGCAAGAAGCAAACTACAAAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAACAGGCTGGGAAATCTGCTTTGCTGTACTCGTTACTGGGAAGGCCTTTCTCAAATAATTATGTTCCAACAACAGTTGAGCAGTATGCGGCAAATGTCATTGAACTAAAAGGGGTAACCCGGAAAATTCTCATATTGCGTGAGATACCCGAGGATAGATTACCGGAACTTTTGTCAAATCAGGATTTTTTGGCTGCATGCGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAGTATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTCGTTAAACATGGAGAACTAACTGGTTATAGAACCCCTTGCCTGGTTATCGCTGCTAAGGATGATTTATCTCCATTGCCAAGGGCAGTACTAGATTCATTCAAGGTTACCCAGGAATTGGGAATAAAGGCACCTGTTCACGTCAGTATGAAACTAGGTGATTCGAGTAATGTGTATAACAAAATTATTAATGCAGCAGAAAACCCTCATTTGAGCATTCCAGAAACTGAGATTTCGCGAAGAAAGAAGCAAAACCACCAGTTTCATCGCTCTCTGATTTTTGCCTTGGTTGGGGCTGCTATGGCAGTTGCCGGTTTGACAGCTTGTCGCGTGCGTGCAGCAAAGAAGAATGCTACTACTGCTTAG 2031 0.4367 MNSSDSIDCPKTHRVSIPTPLQIFSSVPCFPAMVGPFSAGGDRRVVRVAIVGDGGTGKSTLVAAMASESFPESVPPVLPPTRLPHNLYPDSVPLTLIDTPSSFEKQGARSEELKRADTVVLTYACDEPLSFERLSTYWLPELRKLEVKAPVIVVGCKLDLRNENQLVSLESLTTNIMQQFTEIVTCVECSAVTLFQVPEVFYFALKAVLHPVDPLFDYKRHGLTDPCVRALRRIFILCDQDMDGALNDEELNEFQVKCFNAALQPSEIVKVKSIVQQKVPAGVNSVGLTFPGFIYVNNMFLQKGRTETLWAVLRKFGYDNDLKLRDDFLPVPSMHASDQSVELTCEAVEFLNDIFQLLDTDKDLTLRPAEVDNLFDTAPESPWNNAPYKDAAEKTDMGYISLNGFLSQWALMTLLDPKLSLANLIYIGYKGNPAAALHITRKRSLNRKKQTTKRNVFQCYVFGSKQAGKSALLYSLLGRPFSNNYVPTTVEQYAANVIELKGVTRKILILREIPEDRLPELLSNQDFLAACDVAVFVYDSSDEYSWKKSRDLLEKVVKHGELTGYRTPCLVIAAKDDLSPLPRAVLDSFKVTQELGIKAPVHVSMKLGDSSNVYNKIINAAENPHLSIPETEISRRKKQNHQFHRSLIFALVGAAMAVAGLTACRVRAAKKNATTA* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1139 676 PANTHER RHO FAMILY GTPASE 27 525 IPR003578 GO:0005525|GO:0007264
Vra8g1139 676 PANTHER MITOCHONDRIAL RHO GTPASE 27 525 - -
Vra8g1139 676 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Vra8g1139 676 SMART rho_sub_3 48 211 IPR001806 GO:0003924|GO:0005525
Vra8g1139 676 SMART ras_sub_4 43 211 - -
Vra8g1139 676 Gene3D - 41 213 IPR027417 -
Vra8g1139 676 PRINTS Transforming protein P21 ras signature 46 67 - -
Vra8g1139 676 PRINTS Transforming protein P21 ras signature 147 160 - -
Vra8g1139 676 PRINTS Transforming protein P21 ras signature 186 208 - -
Vra8g1139 676 Gene3D - 218 322 - -
Vra8g1139 676 CDD Miro2 454 632 - -
Vra8g1139 676 Gene3D - 520 621 IPR027417 -
Vra8g1139 676 ProSiteProfiles Miro domain profile. 454 623 IPR020860 GO:0003924|GO:0005525
Vra8g1139 676 SMART rab_sub_5 46 211 - -
Vra8g1139 676 Pfam EF hand associated 262 345 IPR013567 -
Vra8g1139 676 ProSitePatterns EF-hand calcium-binding domain. 239 251 IPR018247 -
Vra8g1139 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 628 IPR027417 -
Vra8g1139 676 ProSiteProfiles Miro domain profile. 43 210 IPR020860 GO:0003924|GO:0005525
Vra8g1139 676 Pfam EF hand associated 383 450 IPR013566 -
Vra8g1139 676 SUPERFAMILY EF-hand 214 410 IPR011992 -
Vra8g1139 676 PIRSF Miro 42 675 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Vra8g1139 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 243 IPR027417 -
Vra8g1139 676 Gene3D - 324 514 - -
Vra8g1139 676 Pfam Ras family 48 209 IPR001806 GO:0003924|GO:0005525
Vra8g1139 676 Pfam Ras family 461 580 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1139 Vra-Chr8 26365726 26375961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1139 33 673 EF-hand Containing Proteins AT3G63150 57.632 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1139 K07870 - gmx:100806983 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0102 3 1074183 1082705 Vra8g1139 8 26365726 26375961 PCT