Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0102 ATGGCAAATCAGTCAAGCTTCGGCGGTCGCAGTGGAGTTCGAGTAGTGGTCATCGGCGACCGCGCCACCGGAAAATCGAGCCTGATAGCTGCCATCGCGACGGAGTCATTTGCCGAGTCCATTACGCCGGTTATTCCGCCCACTCTCTTGCCCCCCGATTTGTTCCCCGACAAGGTTCCTCTTACCGTCATTGACACATCTTCCAGCTTGGACAAACAAAGCAAGCGTAAGGAAGAGTTAAAAAGAGCTGATGTTGTGGTTTTAACCTATGCTTGCAACGACACGGCTTCGTTTTCTCGGTTGAGTTCTTACTGGTTCCCGGAACTGCATAAGTTAGAGGTGAAGGTGCCTGTAATCGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGCGCCTCATGACACAGCTACTGCAACAGTTCAAGGAAATTGTCACATGCATTGAATGCTCTGCTGCTACGCAATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTGCATCCAGTAGATCCATTGTATAATATTGGAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTCAATGAAGCAGAACTAAATGATTTTCAGGTTAGATGTTTCAATGTACCATTGCAATCATCTGAAATGGCTGAGGTCAAATCAATTGTACAGCAGAAAGTACCAGAAGGGGTCAACTCACTTGGTCTTACTTTTCCAGGATTTATTTGTGTTCATCATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTCCTAAGAAACTTTGGATATGATAATAATTTGAAACTGAAGGATGATTTCCTTCCTGTTCCGGCTAAGCGTGCTTTGGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTATTAGATTCAGATAAAGATCGAGCCCTACGACCTGCGGAAATTGATAAGTTATTTTGTACTGCTCCAGAAAGTCCTTGGAATGATGCTCCGTATAAGGATTCTGCTGAGATGAATGACATGGGTTACATATCTCTTAATGGATTCCTGTCACAGTGGACCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCGGCAGCAGCTCTCCGTGTTACTCGGAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAGTTCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCGTTCTCAAACAATTATATTCCATCTACAGTTGAAAGGTTTGCAGTAAATGCCATTGAATTAATTGGGGGAGCCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTAAAGTATCAAATGTTTTGTCAAATAAGGACTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACTTTCATGGAGGAAATCCAGAGATTTGCTTGAGAAGGTTGCTAGAGAAGGAGATCTAACCGGTTATAGAGTTCCTTGTCTCCTTATTGCTGCTAAGGATGATTTAACGCCATATCCAAGGGCAGTACAAGATTCAGTAAAGGTTACTCAGGAATTGGGAATAGAGGCACCTATTCACGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACAATAAGATTGTCCATGCTGCTGAGCACCCTCATTTAAGCATTCCGGAAACTCAGATTGGCAAGAAAAGAAAACAATACCATCGGCTTCTTCAGCACTCGCTTGTTTTTGCCTCAGTTGGGACTGCAATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTGAAGAAGAATTCGTCTGAACGGCTTCTTATATAG 1944 0.4326 MANQSSFGGRSGVRVVVIGDRATGKSSLIAAIATESFAESITPVIPPTLLPPDLFPDKVPLTVIDTSSSLDKQSKRKEELKRADVVVLTYACNDTASFSRLSSYWFPELHKLEVKVPVIVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYNIGSQALTDRCVRALRRIFVLCDRDMDEALNEAELNDFQVRCFNVPLQSSEMAEVKSIVQQKVPEGVNSLGLTFPGFICVHHMFLKKGRPETLWAVLRNFGYDNNLKLKDDFLPVPAKRALDQSVELTGEAVEFLNGIFRLLDSDKDRALRPAEIDKLFCTAPESPWNDAPYKDSAEMNDMGYISLNGFLSQWTLMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATERNVFQCYVFGSKSSGKSALLDSLLGRPFSNNYIPSTVERFAVNAIELIGGARKTLVLREIPESKVSNVLSNKDYLAACDVAVFVYDSSDELSWRKSRDLLEKVAREGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTQELGIEAPIHVSMKLGDSSNVYNKIVHAAEHPHLSIPETQIGKKRKQYHRLLQHSLVFASVGTAMAFVGLAACRAYAVKKNSSERLLI* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0102 647 Pfam EF hand associated 350 417 IPR013566 -
Vra3g0102 647 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Vra3g0102 647 Pfam Ras family 428 553 IPR001806 GO:0003924|GO:0005525
Vra3g0102 647 SUPERFAMILY EF-hand 178 378 IPR011992 -
Vra3g0102 647 ProSiteProfiles small GTPase Rab1 family profile. 3 205 - -
Vra3g0102 647 PRINTS Transforming protein P21 ras signature 13 34 - -
Vra3g0102 647 PRINTS Transforming protein P21 ras signature 114 127 - -
Vra3g0102 647 PRINTS Transforming protein P21 ras signature 153 175 - -
Vra3g0102 647 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Vra3g0102 647 CDD Miro2 420 602 - -
Vra3g0102 647 Pfam EF hand associated 229 312 IPR013567 -
Vra3g0102 647 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Vra3g0102 647 Gene3D - 291 481 - -
Vra3g0102 647 PANTHER RHO FAMILY GTPASE 1 492 IPR003578 GO:0005525|GO:0007264
Vra3g0102 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 209 IPR027417 -
Vra3g0102 647 SMART ras_sub_4 14 178 - -
Vra3g0102 647 Gene3D - 10 180 IPR027417 -
Vra3g0102 647 PANTHER MITOCHONDRIAL RHO GTPASE 1 492 - -
Vra3g0102 647 Gene3D - 487 588 IPR027417 -
Vra3g0102 647 Gene3D - 185 289 - -
Vra3g0102 647 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Vra3g0102 647 PIRSF Miro 9 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Vra3g0102 647 SMART rab_sub_5 13 178 - -
Vra3g0102 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0102 Vra-Chr3 1074183 1082705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0102 1 641 EF-hand Containing Proteins AT3G63150 57.722 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0102 K07870 - gmx:100803790 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0102 3 1074183 1082705 Vra8g1139 8 26365726 26375961 PCT