Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1134 ATGGAGCTCAGTAAACTCACCCTAGAGATCTTCTCCAAACTCGAACACAAATGGCTCTCACATTGTAAACCCAACAACAAAACCCGCATTCTCAGCATTGACGGCGGAGGGACCACCGCCATTGTCGCCGGCCAAGCTCTCATCCACCTCGAGGATCAGATCCGTCTCCGCACCTCCGATCCCCAAGCTCAGCTCGCCGATTTCTTTGACATCGTCGCCGGCACTGGCATTGGCGCTATCCTCGCCGCCATGATCACCTCCGGCGACGCCTTCGGCAGGCCGATGTATACCGCCAGAGAAGCCGTCCGTCTAGTCTCCGAGAGGAACTCCGAACTCTACAAGTTCAAATCCGGAGGCGTGTTCCGCCGGCGCCGGAAATTCTCCTCCAGTAGCATGGACAACGTATTGAAGCAAGTGTTCCAGAGGAAGGAGGACGGACGGTTGTTGACCTTGAAGGACACGTGTAAACCGCTTCTTATCCCTTGCTTCGACCTCAAGAGTTCCGCGCCCTTCGTCTTTTCGCGCGCCGACGCGTCCGAGTCTCCGAGCTTCGACTTCGAGCTCTGGAAGGTGTGTCGCGCCACGTCAGCGACGCCGAGCCATTTCAAGCCGTTCGACTTGGCTTCCGTCGACGGCAAGACCTTGTGCTCCGCCGTGGACGGCGGCCTGGTGATGAACAACCCTACGGCGGCTGCCGTCACGCACGTTCTCCACAACAAGCACGATTTCCCGTCGGTGAACGGCGTGGAGGATCTCCTGGTCCTTTCCTTGGGAAACGGATCGTCCAACACCAAAGCGTGCGAGAACAGCACGTGCTCCACACCATCGGTGGTTGACATTGTGCTCGACGGCGTTTCCGAGACCATTGACCAGATGTTGGGTAACGCCTTCTGTTGGAACCGTACGGACTATGTCAGAATCCAGGTCCATGAAGCCTTCGGTTTGGGAAGCAAAGCAATGAGGAAGGAGGAGGTGCTCAAAGAGAAAGGACTGGAGTCGCTACCGTTTGGCGGGAAGCGCTTACTGACGGAGACTAACGGAAACAGAATAGATAGCTTCGTGCAACGTCTTGTTGCAACCGCAAAACCAAGCCCGCCGTCTAGTCCGTGCAAGGATTCCGCCGTTAACTCTCTCGCTAACGGCCGCTAG 1149 0.5692 MELSKLTLEIFSKLEHKWLSHCKPNNKTRILSIDGGGTTAIVAGQALIHLEDQIRLRTSDPQAQLADFFDIVAGTGIGAILAAMITSGDAFGRPMYTAREAVRLVSERNSELYKFKSGGVFRRRRKFSSSSMDNVLKQVFQRKEDGRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFDFELWKVCRATSATPSHFKPFDLASVDGKTLCSAVDGGLVMNNPTAAAVTHVLHNKHDFPSVNGVEDLLVLSLGNGSSNTKACENSTCSTPSVVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQVHEAFGLGSKAMRKEEVLKEKGLESLPFGGKRLLTETNGNRIDSFVQRLVATAKPSPPSSPCKDSAVNSLANGR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1134 382 PANTHER INACTIVE PATATIN-LIKE PROTEIN 9-RELATED 1 382 - -
Vra8g1134 382 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 233 IPR002641 GO:0006629
Vra8g1134 382 MobiDBLite consensus disorder prediction 366 382 - -
Vra8g1134 382 PANTHER PATATIN-LIKE PROTEIN 6 1 382 - -
Vra8g1134 382 CDD Pat17_PNPLA8_PNPLA9_like 30 309 - -
Vra8g1134 382 SUPERFAMILY FabD/lysophospholipase-like 26 315 IPR016035 -
Vra8g1134 382 MobiDBLite consensus disorder prediction 360 382 - -
Vra8g1134 382 Pfam Patatin-like phospholipase 31 232 IPR002641 GO:0006629
Vra8g1134 382 Gene3D Cytosolic phospholipase A2 catalytic domain 16 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1134 Vra-Chr8 26218835 26220829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1134 1 382 Acyl Lipid Metabolism Gene Families AT3G63200 69.845 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1134 - - gmx:100795441 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1134 8 26218835 26220829 Vra8g1134 8 26218835 26220829 ECH
Vra3g0110 3 1209733 1211310 Vra8g1134 8 26218835 26220829 PCT