Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0110 ATGGAGCTTAGCAAAGTAACGCTCGAGATCTTCTCCAAACTCGAGCAGCAATGGCTTTCCCACTACGAAGCCACATCCAAAACCCGCATTCTCAGTATCGACGGTGGAGGAACCACCGCCATTGTCTCCGGCGCAGCCCTCATCCACCTCGAGGACCAGATCCGAGCCCAAACCAGCGATCCCCACGCGCAAATCGCTGATTATTTCGACATCATCGCCGGAACCGGCATTGGCGCCATCGTAGCCGCCATGATTACCGCCGACGACGGCTTCGGTCGGCCTCTCTACACTGCCCGCGACGCTGTCCACTTCCTCGCCGAGAGCAATAGCGAACTGTTCAAGCCGAAGCGCTCCGGCGTGTTCCGCCGCCGCCGCCGATTCTCAGCGCGGAGCATGGAAAACGCGCTGAAGCGGGTTTTCCAAAGAAAAGAGGAAGAGCGACGGCTGTTGACTATGAAGGACACGTGTAAGCCTCTGCTCATTCCTTGCTTTGACCTCAAGAGTTCTGCGCCATTTGTGTTCTCCCGAGCCGACGCATCCGAGTCACCGAGTTTCAACTTCGACCTTTGGAAGGCGTGCCGAGCCACTTCAGCCACGCCTGGCCTCTTCGCGCCATTCCATTTCGCCTCTGTCGACGGTAAGACCTCGTGCGCCGCCGTTGACGGCGGCCTTGTGATGAATAACCCGGCGGCAGCGGCCGTCACGCACGTCCTCCACAATAAGCGCGACTTCCCGTCGGTGAACGGCGTGGAGGATCTCCTCGTGCTCTCGATCGGAAACGGAGCGCCGGCTAAGAGAATAAACACCGCCGGTGAGTGCTCCACGTCGACAGTGGTTGACATTGCGCTGGATGGCGTTTCAGAAACCGTTGACCAGATGTTAGGGAACGCCTTCTGTTGGAACCGTACGGATTATGTCAGGATTCAGGCGTTCGGTTTGGGAGAAGGAAAAGAAGACAAGGTGTTGAACGAGAGAGTGTTGGAATCGTTACCGTTTGGTGGAAAACGATTACTGCAAGAAACTAACGCTGACAGAATCGAGAGCTTCGTGCAACGTCTTGTTGCTACCGGAAAGACTAGTCTGCCACCCAGTCCCTGCAAGGTGCCGCCGTAA 1113 0.5696 MELSKVTLEIFSKLEQQWLSHYEATSKTRILSIDGGGTTAIVSGAALIHLEDQIRAQTSDPHAQIADYFDIIAGTGIGAIVAAMITADDGFGRPLYTARDAVHFLAESNSELFKPKRSGVFRRRRRFSARSMENALKRVFQRKEEERRLLTMKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFDLWKACRATSATPGLFAPFHFASVDGKTSCAAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLLVLSIGNGAPAKRINTAGECSTSTVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLGEGKEDKVLNERVLESLPFGGKRLLQETNADRIESFVQRLVATGKTSLPPSPCKVPP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0110 370 Gene3D Cytosolic phospholipase A2 catalytic domain 17 361 - -
Vra3g0110 370 SUPERFAMILY FabD/lysophospholipase-like 27 314 IPR016035 -
Vra3g0110 370 PANTHER PATATIN-LIKE PROTEIN 6 2 370 - -
Vra3g0110 370 CDD Pat17_PNPLA8_PNPLA9_like 30 330 - -
Vra3g0110 370 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
Vra3g0110 370 Pfam Patatin-like phospholipase 31 233 IPR002641 GO:0006629
Vra3g0110 370 PANTHER PATATIN 2 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0110 Vra-Chr3 1209733 1211310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0110 1 367 Acyl Lipid Metabolism Gene Families AT3G63200 69.705 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0110 - - gmx:100806989 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0110 3 1209733 1211310 Vra3g0110 3 1209733 1211310 ECH
Vra3g0110 3 1209733 1211310 Vra8g1134 8 26218835 26220829 PCT