Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1120 ATGGCTTTTAGAGGGTTTATGTTGTGTGTAGTTACGGTTATGGTGGCTACCATATGTACTAAAAATGCTACTGCTCAATCAGGTTGCAGCAGTACACTGACTAGCTTGAGCCCTTGCCTGAACTACGTAATGGGAAGTTCTTCAACCCCATCAACTCCATGTTGCTCACAGCTCTCAACCATTGTCCAATCTTCACCACAGTGTCTTTGCTCCTTGCTCAGTGGTGGTTCCACTTTCGGAATTACCATTAATCAGACTCTTGCTTTGTCTCTCCCTGCTGCTTGTAAAGTTCAAACACCCCCAGTTAGCCAGTGTCAAGCTGGGAATGGACCAACACCTCCTTCCACTGCTCCAGTTGCTTCTCCTTCTGATTCTTCAGCTGAATCACCTCAAGAGTCAATATCACCTTCTGCTTCAGACTTTCCATCAGGTGCAGGATCTAAAACGGTTCCATCAACAGATGGTGGTTCATCTGATGGAAACGCTGTTGAAGTCCCTTCTCACTTGGTGTTCTATCTTATTGCCATTGTGTCTTTTGTCTTGACCTTCATCAAGTTCTGA 561 0.4528 MAFRGFMLCVVTVMVATICTKNATAQSGCSSTLTSLSPCLNYVMGSSSTPSTPCCSQLSTIVQSSPQCLCSLLSGGSTFGITINQTLALSLPAACKVQTPPVSQCQAGNGPTPPSTAPVASPSDSSAESPQESISPSASDFPSGAGSKTVPSTDGGSSDGNAVEVPSHLVFYLIAIVSFVLTFIKF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1120 186 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 181 IPR043325 -
Vra8g1120 186 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Vra8g1120 186 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Vra8g1120 186 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Vra8g1120 186 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 106 IPR036312 -
Vra8g1120 186 CDD AAI_LTSS 36 97 - -
Vra8g1120 186 SMART aai_6 29 105 IPR016140 -
Vra8g1120 186 Gene3D - 25 105 IPR036312 -
Vra8g1120 186 Pfam Probable lipid transfer 10 105 IPR016140 -
Vra8g1120 186 MobiDBLite consensus disorder prediction 104 159 - -
Vra8g1120 186 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1120 Vra-Chr8 25976206 25977238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1120 4 177 Acyl Lipid Metabolism Gene Families AT2G48130 41.011 7.81e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1120 - - gmx:100306151 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1120 8 25976206 25977238 Vra8g1120 8 25976206 25977238 ECH
Vra8g1120 8 25976206 25977238 Vra3g0124 3 1413789 1414931 PCT