Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0124 ATGGCACCCAGAAGGATTGAGATGCTGCTAAGGCTGTGCCTTGTTATGGCTCTTTGGGGTGGCACATTGGCTCAATCTCAATCAAGTTGCACCAATGTCTTCATAAGTCTTGCTCCCTGCCTTGACTATGTAACAGGAAATGTCTCAAACCCTTCCTCTTCTTGCTGCTCTCAACTTGCCTATGTAGTGAGTTCACAACCACTGTGCCTGTGTGAGGTTGTTAGCGGTGCTGCTTCAACAATTGCTGCAAGTTTCAACATCAATCAGACTCGGGCTTTGGCTCTCCCCACTTCTTGCAACATTCAGACACCTCCTCTTACCACCTGCACTGGGATTGGATCCAACACTGTTTCATCAGCGACCGGAAGTAGTACATTTGTCGGTGGTTCATCTCACCAAAATTCAAGTTCCACTTCTAAATTATCATGTTCTTGGTTTCTGATGTTTGTCCTTGCAACCACTTTGACTTTCACCTTCAAGAGTACCACATCGCTCAACATTTTTTAA 507 0.4536 MAPRRIEMLLRLCLVMALWGGTLAQSQSSCTNVFISLAPCLDYVTGNVSNPSSSCCSQLAYVVSSQPLCLCEVVSGAASTIAASFNINQTRALALPTSCNIQTPPLTTCTGIGSNTVSSATGSSTFVGGSSHQNSSSTSKLSCSWFLMFVLATTLTFTFKSTTSLNIF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0124 168 Pfam Probable lipid transfer 24 109 IPR016140 -
Vra3g0124 168 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 109 IPR036312 -
Vra3g0124 168 CDD AAI_LTSS 37 101 - -
Vra3g0124 168 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 161 IPR043325 -
Vra3g0124 168 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Vra3g0124 168 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Vra3g0124 168 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Vra3g0124 168 PANTHER LIPID TRANSFER PROTEIN 6 161 - -
Vra3g0124 168 Gene3D - 27 107 IPR036312 -
Vra3g0124 168 SMART aai_6 30 109 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0124 Vra-Chr3 1413789 1414931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0124 5 109 Lipid Metabolism Gene Families AT3G22600 49.057 1.40e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0124 - - gmx:100789510 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0124 3 1413789 1414931 Vra3g0124 3 1413789 1414931 ECH
Vra8g1120 8 25976206 25977238 Vra3g0124 3 1413789 1414931 PCT