Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1118 ATGAGAGATGAGCACTCGAAGAAAAGCAAGCTTTCGTGGCCCAAGACGTTGGTCAAGAAGTGGTTCAATATTAAGAGCAAAAACGAGGACTTTCACGCAGATGACGTCCTCTACGCAGGTGTTAACGAAGAGTGGAGCAACAACTGTTCGCAGAGTGAGGAATACACTATCAAGAAAAGCAAAACAGAGAGAGCAAAGAGAAGGCACTCAGACAGAATGCGGCGAGGCAAGGTTAACTTTGATGCAGCTCAGGATACAGATGTGCATAACTATAGAATCTTTGCTGCTACTTGGAATGTAGCTGGAAAATCTCCTCCAAGTTACTTGAGTCTGGAAGATTGGCTTCACTCTTCTCCTCCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTCAATGCTGGTAATGTTTTGGGCACGGAAGATAATGGCCCTGCCAGAAAGTGGCTAGCTCTTATTAGAAAGACCCTAAACAGTCTTCCTGGAACAAGTGGTGAATGCCACACTGCTTCTCCACTTCCTGATCCTATTGTAGAGTTAGATGCTGATTTTGAAGGATCAATGAGGCAGAAGACAACCTCTTTCTTTCATCGCCGGTCGTTTCAATCCTTCAGTCATAGTATGAGAATGGACAATGACATGTCACTTCCACAAGCATACCTTGATCGCCGCCTCAGCGTCTGCGACAGAATGATGTCTGGTCACAGAACAAGTGATTACGACCCCAACTACAGATGGGCTTCTTCGGACGATGAAAATGGCACCGGTGACTCCCCAGTTACAACACAATATTCACCAATGACATGTAAAGGTTTTTTCTCTGTGGAGGATAGAGATAGACAGACAGGGCACTCAAGATACTGCTTGGTTGCAAGTAAACAAATGGTTGGAATATTTCTAACAGTTTGGGTGAAGAGCGATATAAGAGATGATGTTCACAACATGAAAGTATCTTGTGTTGGAAGAGGATTAATGGGATATCTTGGAAACAAGGGTTCAATATCAATCAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACTTCTGGACAAAAGGAGGGTGATGAGCTAAGGAGAAATTCTGATGTGATGGAGATTCTGAGAAAGACAAGATTTCCCCGAGTTCATGGCATGGGCGATGAGAGTTCTCCGCAGACAATTTTGGAACACGATCGAATAATTTGGCTGGGGGATTTAAATTATCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATAACTGGAAGGATCTGTTAGAGAATGACCAGCTACATATAGAGCGGAGACAAGGTCGAGTTTTTGAAGGATGGAATGAGGGGAAAATATATTTCCCTCCTACATACAAGTATTCAAACAACTCAGATAGATATGCAGGCGATGAAAGGCACTCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGTAGAGGCCTCCGCCAATTATCTTATGTTCGTGGGGAATCAAGATTCTCAGATCATAGGCCAGTTTATAGCATGTTCCTGGCAGAAGTTGAGTCTGTTAGCCGTAGCCGAATAAAAAAATGTTCCAGTTGCTCCAGTTCAAGGATTGAAGTAGAAGAGCTGTTGCCACATTCACATGGTTACAGATATGCTGATTTGAATTTCTATTAA 1683 0.4302 MRDEHSKKSKLSWPKTLVKKWFNIKSKNEDFHADDVLYAGVNEEWSNNCSQSEEYTIKKSKTERAKRRHSDRMRRGKVNFDAAQDTDVHNYRIFAATWNVAGKSPPSYLSLEDWLHSSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNSLPGTSGECHTASPLPDPIVELDADFEGSMRQKTTSFFHRRSFQSFSHSMRMDNDMSLPQAYLDRRLSVCDRMMSGHRTSDYDPNYRWASSDDENGTGDSPVTTQYSPMTCKGFFSVEDRDRQTGHSRYCLVASKQMVGIFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVHGMGDESSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHNWKDLLENDQLHIERRQGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDERHSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVYSMFLAEVESVSRSRIKKCSSCSSSRIEVEELLPHSHGYRYADLNFY* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1118 560 Pfam Endonuclease/Exonuclease/phosphatase family 96 510 IPR005135 GO:0003824
Vra8g1118 560 SMART i5p_5 225 525 IPR000300 GO:0016791|GO:0046856
Vra8g1118 560 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 3 559 IPR045849 GO:0004445|GO:0046855
Vra8g1118 560 SUPERFAMILY DNase I-like 76 533 IPR036691 -
Vra8g1118 560 Gene3D Endonuclease/exonuclease/phosphatase 251 545 IPR036691 -
Vra8g1118 560 Gene3D Endonuclease/exonuclease/phosphatase 70 207 IPR036691 -
Vra8g1118 560 PANTHER PHOSPHORIC MONOESTER HYDROLASE-RELATED 3 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1118 Vra-Chr8 25940638 25945724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1118 292 527 Acyl Lipid Metabolism Gene Families AT2G43900 29.242 1.52e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1118 - - gmx:100788764 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1118 8 25940638 25945724 Vra8g1118 8 25940638 25945724 ECH
Vra3g0127 3 1425876 1431011 Vra8g1118 8 25940638 25945724 PCT