Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0127 ATGAGAGATGAGAACTCGAAGAAGAGCAAGCTTTTTTGGCCAAAAACATTGGTCAAGAAGTGGTTCAATATCAAGAGCAAAGCTGAGGATTTTCAGGCAGATGATGTTCTCTCCCAAGGGGTTGATGAAGAGTGTAGTAGCAACTACTCTGAGAGGGAGGCATGCACCATCAGGAAAAGCAAATCAGAGAGATCAAGCAGATGGTACTCAGACAGAGTGCGAAGAGGTAAGAATGACCTTGATAAAGCTCAGGTTACAGATGTGTATAACTATAGAATCTTTGTTGCCACTTGGAATGTAGCAGGGAAGTCACCTCCAAGTTATTTGAGTCTTGAAGATTGGCTTCACACCTCTCCACCAGCGGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTTAATGCTGGTAATGTTTTGGGAACAGAAGACAATGGTCCTGCAAGAAAATGGCTAGCCCTTATTAGGAGGACCTTGAACAACCTTCCTGGAACAAGTGGAGGATGCCACACACCTTCACCCCTCCCTGATCCTATTGTTGAGCTAGATGCTGATTTTGAGGGATCAGTGAGGCAGAAGGCTACCTCTTTCTTTCAACGAAGATCCTTCCAATCCTTGAGTCGTAGTTTGAGAATGGATAATGATATGTTAATGCAACAAGCTTGCCTCGATCGTCGTTTCAGTGTCTGTGATAGAGTGATATTTGGTCACAGAGCGAGTGACTATGACCCCAATTATCGATGGGGTTCCTCAGATGAAGAAAATGGCGCTGGTGACTCTCCAATTACAGCACAGTATTCACCGATGTCATACGGTGGTTTTTTCTCTGCAGAGGATAGTGATAGGCAGACAGGCCACTCAAGATACTGCTTGGTTGCTAGCAAGCAAATGGTTGGGGTATTTCTAACTGTTTGGGTGAAAAGTGATATAAGAGATGATGTTCACAACATGAAAGTGTCTTGTGTTGGCCGAGGGTTAATGGGATATCTCGGAAACAAGGGATCAATATCAATTAGTATGTCAGTGCACCAAACAAGCTTTTGCTTCATTTGTAGTCATTTGACTTCGGGACAAAAGGATGGTGATGAGTTAAGGAGAAATTCAGATGTAATGGAGATTCTCAGAAAGACAAGGTTTCCCCCAGTCCACGACATGGGTGATGAGAATTCTCCTCAGACAATTCTGGAACATGATCGAATAATTTGGCTGGGGGATTTAAATTACCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATGATTGGAAGACTTTGTTAGAGAATGACCAGCTGTGTATAGAGCAGAGGCAAGGTAGAATCTTTGAAGGATGGAACGAAGGGAAAATATATTTCCCTCCAACATATAAGTATTCAAATAATTCAGACCGATATGCAGGCGATGACAGGCGCTCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAAGGGGCCTTCACCAATTATCATATGTTCGTGGGGAGTCAAGATTTTCTGATCATAGGCCAGTTTATAGCATATTCTTGGCAGAGGTTGAGTCTACTAGCTGCAACCAAATAAAGAAAAGCTCCAGTTCCAGGATTGATGTAGAAGAGTTGTTTCCAAATTCACATGGTTATGACTACACTGATTTGCACTACTTTTGA 1674 0.4271 MRDENSKKSKLFWPKTLVKKWFNIKSKAEDFQADDVLSQGVDEECSSNYSEREACTIRKSKSERSSRWYSDRVRRGKNDLDKAQVTDVYNYRIFVATWNVAGKSPPSYLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRRTLNNLPGTSGGCHTPSPLPDPIVELDADFEGSVRQKATSFFQRRSFQSLSRSLRMDNDMLMQQACLDRRFSVCDRVIFGHRASDYDPNYRWGSSDEENGAGDSPITAQYSPMSYGGFFSAEDSDRQTGHSRYCLVASKQMVGVFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSVHQTSFCFICSHLTSGQKDGDELRRNSDVMEILRKTRFPPVHDMGDENSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHDWKTLLENDQLCIEQRQGRIFEGWNEGKIYFPPTYKYSNNSDRYAGDDRRSKQKRRTPAWCDRILWYGRGLHQLSYVRGESRFSDHRPVYSIFLAEVESTSCNQIKKSSSSRIDVEELFPNSHGYDYTDLHYF* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0127 557 Pfam Endonuclease/Exonuclease/phosphatase family 96 510 IPR005135 GO:0003824
Vra3g0127 557 Gene3D Endonuclease/exonuclease/phosphatase 71 182 IPR036691 -
Vra3g0127 557 Gene3D Endonuclease/exonuclease/phosphatase 273 542 IPR036691 -
Vra3g0127 557 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 3 556 IPR045849 GO:0004445|GO:0046855
Vra3g0127 557 SUPERFAMILY DNase I-like 83 525 IPR036691 -
Vra3g0127 557 PANTHER PHOSPHORIC MONOESTER HYDROLASE-RELATED 3 556 - -
Vra3g0127 557 SMART i5p_5 225 525 IPR000300 GO:0016791|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0127 Vra-Chr3 1425876 1431011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0127 124 490 Acyl Lipid Metabolism Gene Families AT2G43900 26.515 3.36e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0127 - - gmx:100803074 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0127 3 1425876 1431011 Vra3g0127 3 1425876 1431011 ECH
Vra3g0127 3 1425876 1431011 Vra8g1118 8 25940638 25945724 PCT