Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1105 ATGAGGACTTTTTTCACTGCGGAATCATGTAAAGAAGCGCATCCTAATGCTTTAAACCCACAATCCTGGCTCCAAGTTGAAAGAGGCAAGCTTTCCAAGTTGTCATCGAAGTCCTCATCTTCATCAATAGAATCTCTAATCAAGGTCCCACAGCCACCTATACTCCCATTCTTCAAGCCTGTTGATTATGTGAAAGTTTTAGCTCAAATTCATGAAGAACTTGAGCTCTGCTCTCCGCAGGAGCAGTCAAATCTGTTTTTGTTACAGTACCAGGTCTTTAGGGGCATGAGGGATGTTAAACTGATGCGAAGAAGCCTCCGGTCAGCTTGGCAAAGAGCAAACACTGTTCATGAGAAGATTATATTTGGAGCATGGCTGAAGTATGAGAAGCAAGGGGAAGAATTAGTTGCTCAATTGCTAACAGCTTCTGGTAAATGTGAAAGGGAATTTGAACCCATTGATGTAGAATCTCATATTTCTTTTGACAAAGTTATAATTTCCCAGGATAGAGTTTCCATGAATGATGGGAACCAAACTCCACAGTATGTAATCTTTACAATCGGAGATGAGAAGATAGTCTGTGATAGACAAAAAATTTCTGAACTTTCAGCACCATTTCATGCAATGCTAAAGGGGTGTTTCAGGGAATCGCTTTCTGAGACCGTCGATTTGTCTGAAAACAACATCTCTCCTTCAGGTATGAGGGCAATAAACTATTTTAGCTTGACTGGCAGTTTGCTTGATGTCCCTCAGAATCTTTTGGTCGAGATATCAGTTTTTGCAAACAAGTATTGTTGCGAAAGACTAAAACTGGCTTGTGATAGAAAACTTGCATCCTTAGTTTCCTCCAGAGAAGATGCACTGGAACTCATGGAATATGCTGTGGACCAGAATTCATCTGTGCTTGGGGCTTCTTGTTTACAAGTGCTTTTACGCGATATTCCCAACTGCCTGAGTGACAAAAGGGTTGTGGAGTTATTTATTCATGCTAACAGGAAGGAGTTGGAAGTCATGGTTGGGCCTGGTATATTTGCACTTTTTTGTTTCTTAAGCGAAGTTTCTATGAACCTTAGTTCTAGTTCAGACACAACAGCTCATTTCCTGGAACGGTTGGTTGATTTTGCTGAAAATGACATACAGAGAATGCTGGCATTTCATGAATTGGGATGCGTAAGGCTTTCAAGGAAAGAATATGATGAAGCCTATGGTCTTTTTGAGAGGGCTGCAAATGCAGGCCATATTTATTCCGTTGCAGGTTTAGCTAGACTGGATTCTATAAAGGGTGAGAAGCTTTTACCCTATCAGAAGATAAGTTCAGTCATTTGTTCTGGTACTCCTCTTGGATGGATGTACCAGGAAAGATCACTGTACTGTGATGGTGATGTGAGGTGGAAAGACCTTGAGAAAGCAACTGAACTGGACCCGACTCTTGTATATCCCTACATGTATAGGTCTGCCACTTTAATGAGGACAGAAAATGTTGAAGGTGCATTGTCTGAAATCAACCGGATTCTTGGCTTCAAACTTTCATTAGAATGTTTGGAACTACGGTTTTTCATCTATCTGGCCCTTGAGGACTACAAAGCGGCGCTCCGAGATGTTCAAGCAATTCTTACCCTGTGTCCATCTTATAAAATGTTTGAAGGCCGTGTAGCTGCATCTCAGCTCTGTACTCTTGTGCGTGAGCATGTTGAACATTGGACAACTGCAGATTGTTGGGCACGATTATATGACTGTTGGTCTGCCGTTGATGATATTGAGTCTCTTTCTGTCATCTACCAGATGCTTGAATCTGATGCTCCCAAAGGTGTTCTATACTTCAGACAGTCGTTGCTTCTCCTTAGGCTAAGCTGTCCTGAGGCAGCGATGAGGAGTTTACAGTTAGCTTGGGAACAGGCATCAAGTGAGCATGAAAGGCTTGTGTATGAAGGGTGGATCCTGTATGATTCAGGACATTATGAAGAAGGGCTCCAAAAAGCTGAAGAGTCTATTGCTATTAAAAGGTCTTTTGAGGCCTACTTCCTAAAAGCCTATGCATTGGCTGACTCTAGTGTTGATTCATCATGTTCTTCAACTGTCATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCGGATAATCTGCGCAAGGGTCAGGCTCTGAACAATCTTGGAAGTGTTTATGTTGATTGCGGGAAACTAGACGCAGCAGAAGAATGCTATGTGAAGGCCCTTAAAATCCAGCACACGCGAGCCCATCAGGGTCTTGCTCGTGTTCATTTTCTCAGAAATGACAAGGCTGCTGCTTTGAAGGAAATGACCAATCTTATTGAGAGGGCAAGAAACAATGCTTCAGCTTACGAGAAGAGGTCTGAGTATGGTGATCGTGAACTCACAAAGGCTGATCTGGAGATGGTCACTAGATTAGATCCTCTTCGGGTGTATCCTTATAGATATCGAGCAGCAGTTTTGATGGACAACCACAAGGAAGAGGAAGCCATTGCTGAACTCTCCAGAGCAATTGCATTTAAAGCTGATTTGCATCTGTTGCATCTTCGTGCAGCATTTCATGAACACAAGGGAGATGTCTTAAGTGCATTGAGAGATTGTCGTGCTGCACTCTCTGTTGACCCAAATCATCAGAAAATGTTGGAACTTCACTATCGTGTTAATAGTCACGAGCCATGA 2667 0.4248 MRTFFTAESCKEAHPNALNPQSWLQVERGKLSKLSSKSSSSSIESLIKVPQPPILPFFKPVDYVKVLAQIHEELELCSPQEQSNLFLLQYQVFRGMRDVKLMRRSLRSAWQRANTVHEKIIFGAWLKYEKQGEELVAQLLTASGKCEREFEPIDVESHISFDKVIISQDRVSMNDGNQTPQYVIFTIGDEKIVCDRQKISELSAPFHAMLKGCFRESLSETVDLSENNISPSGMRAINYFSLTGSLLDVPQNLLVEISVFANKYCCERLKLACDRKLASLVSSREDALELMEYAVDQNSSVLGASCLQVLLRDIPNCLSDKRVVELFIHANRKELEVMVGPGIFALFCFLSEVSMNLSSSSDTTAHFLERLVDFAENDIQRMLAFHELGCVRLSRKEYDEAYGLFERAANAGHIYSVAGLARLDSIKGEKLLPYQKISSVICSGTPLGWMYQERSLYCDGDVRWKDLEKATELDPTLVYPYMYRSATLMRTENVEGALSEINRILGFKLSLECLELRFFIYLALEDYKAALRDVQAILTLCPSYKMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIESLSVIYQMLESDAPKGVLYFRQSLLLLRLSCPEAAMRSLQLAWEQASSEHERLVYEGWILYDSGHYEEGLQKAEESIAIKRSFEAYFLKAYALADSSVDSSCSSTVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDAAEECYVKALKIQHTRAHQGLARVHFLRNDKAAALKEMTNLIERARNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLSALRDCRAALSVDPNHQKMLELHYRVNSHEP* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1105 888 SUPERFAMILY TPR-like 385 740 IPR011990 GO:0005515
Vra8g1105 888 Gene3D Potassium Channel Kv1.1; Chain A 179 320 IPR011333 -
Vra8g1105 888 Coils Coil 756 783 - -
Vra8g1105 888 Gene3D Tetratricopeptide repeat domain 599 775 IPR011990 GO:0005515
Vra8g1105 888 SMART BTB_4 181 281 IPR000210 GO:0005515
Vra8g1105 888 Pfam Tetratricopeptide repeat 712 742 IPR001440 GO:0005515
Vra8g1105 888 SUPERFAMILY POZ domain 183 278 IPR011333 -
Vra8g1105 888 Gene3D Tetratricopeptide repeat domain 362 549 IPR011990 GO:0005515
Vra8g1105 888 PANTHER ETO1-LIKE PROTEIN 1 1 888 - -
Vra8g1105 888 SUPERFAMILY TPR-like 694 880 IPR011990 GO:0005515
Vra8g1105 888 Gene3D Tetratricopeptide repeat domain 785 886 IPR011990 GO:0005515
Vra8g1105 888 ProSiteProfiles TPR repeat profile. 711 744 IPR019734 GO:0005515
Vra8g1105 888 SMART tpr_5 711 744 IPR019734 GO:0005515
Vra8g1105 888 SMART tpr_5 511 544 IPR019734 GO:0005515
Vra8g1105 888 SMART tpr_5 840 873 IPR019734 GO:0005515
Vra8g1105 888 SMART tpr_5 382 415 IPR019734 GO:0005515
Vra8g1105 888 SMART tpr_5 637 670 IPR019734 GO:0005515
Vra8g1105 888 PANTHER ETO1-RELATED 1 888 IPR044631 GO:0010105
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1105 Vra-Chr8 25705980 25710678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1105 712 872 Glycosyltransferase AT3G04240 26.901 3.84e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1105 - - gmx:100785039 1545.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0135 3 1525390 1534714 Vra8g1105 8 25705980 25710678 PCT