Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0135 ATGAGGAGTTTCTTCCCTGCAGAATCCTGTAAAGAGACGCATCCAAATGCTTTGAATCCTCAGTCTTGGCTTCAAATTGAAAGAGGGAAACTTCCCAAGTTGTCATCGTACCCTTCCTCTGCCTCAATAGAATCTCTGGTCAAGGTCCCTCAGCCAGCTCTACTGCCTTTCTATAAGCCTGCTGATTATGTGGAGGTTTTAGCGCAAATCCATGAAGAGCTTGAGTCTTGTCCTCCACAAGAGCGGTCGAATCTGTTTTTGTTACAATACCAAGTCTTTAGGGGCCTTGGGGAAGTTAAACTGATGCGTAGAAGCCTTCAGGGAGCCTGGCAGAAAGCCAATACTGTTCATGAGAAGATTATATTTGGGGCATGGTTGAAATATGAGAAGCAAGAGGAAGAACTAATAGCCGACTTGCTTGCCAATTGTGGTAAATGTGCGAAGGAGTTTGCACCTGTAGATATACCATCTCATCTTCCATTTGATGTAAATGTAAGTTCTATAGGGAGAATGACCAATGAGAACTGCATTTCTCAAAATGTTACTTTTACAATTGGCGATGAAGAGATAGTTTGTGATAGACAAAAAATTTCTGAACTTTCGGCACCATTTAATGCTATGCTAAAGGGGTATTTCAGCGAATCACGTGCTGAGACTATAGATTTGTCTGAAAATAATATCTCTCCATTTGGTATGAAGGCAATAAGTATTTTCAGTTTGACTGGCAGTTTGATTGAGGTCCCCCCAAATCTTTTATTGGAGATATTAGCTTTTGCAAATAAGTATTGTTGTGAAAGACTTAAAGATGCTTGTGATAGAAGACTTGCATCCATGGTTTCCTCCAAAGAAGATGCTGTAGAGCTCATGGAATATGCTCTTGATGAGAATTCAACTGTACTTGCTGCATCCTGTTTACAAGTACTTTTGCGTGATCTTCCAAACTGTTTGAATGACAGTCGGGTAGTGGAGATATTTGTTCATGCTAATAAGCAGCAGCTAGCAGTAATGGTTGGGCCAGGTATATTTGCTCTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCCGACAAAACAGTTCATATCCTGGAACGGTTAGTTGAGTTTGCTGAGAATGACAAACAAAGAATCCTTGCTTTACATCAATTGGGATGTGTAAGACTCTTACGGAAAGAATATGATGAAGCACGTCTTCTTTTTGAAGGGGCCGTAAACGCAGGCCATATATATTCTGTCGCAGGTTTAGCTAGGCTGGACTTTATAAAGGGCGACAAGTTTTTATCTTATGAGCTGCTGAGCTCGGTCATTTCATCTGTTACTCCACTTGGATGGATGTATCAGGAAAGGTCATTATACTGTGACAGTGACAAAAGGTGGGATGACCTTGAGAAAGCAAGTAATTTGGATCCTACACTTGCATATCCTTACATGTACAGGGCTGCCTCTTTGATGAGTACGCAGAATGCTCAAGCTGCACTATCAGAAATCAATAGGATTCTTGGGTTCAAACTTTCACTAGAATGCTTAGAAATACGATTTTTTACCCATCTGACTCTTGAGGACTACAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTTTACGTTCAGATTATAGAATGTTTGAGGGACGTGTTGCTGCATCTCAGCTCTGCACACTTGTGCGTGAGCATGTTGAACATTGGACAACTGCTGATTGTTGGGCTCGGTTATATGACTGTTGGTCTGCAGTTGATGATATTGGGTCTCTGTCTGTTATATACCAGATGCTTGAATCTGATGCGGCAAAAGGTATTCTGTACTTCAGACAGTCATTGCTTCTCCTCAGGTTGAACTGTCCTGAGGCTGCTATGCGGAGTTTACAGTTAGCTCAGCAACATGCATCAAGCGAACATGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATGAGGAAGGTCTCCAGAAAGCAGAGGAGTCTATTAGTATCAAAAGATCTTTTGAGGCATTTTTCCTGAAGGCCTATGCATTGGCTGACTCTAGCATAGATCCATCATGTTCACCGATTGTTATCTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTATGTTGACTGCGGTAAATTGGACTTGGCTGCTGATTGTTATATCAATGCCCTTAAAATTCGACATACCAGAGCTCATCATGGTCTTGCGCGTGTTCATTGCCTAAAAAATGACAAGGCTGCTGCTTATAGGGAAATGACCGAACTTATCAAGAAAGCAAAAAACAATGCATCGGCTTATGAGAAGAGGTCTGAGTATTGTGATCGTGAACAAGCAAAGGCAGATTTGGAGATGGTCACTAGATTGGATCCTCTTCGGGTGTATCCTTATAGATATCGTGCTGCAGTATTGATGGACAACCACAAGGAAGAGGAAGCCATAGCCGAACTCTCGAGAGCAATTGCATTTAAAGCTGATTTGCACCTCTTGCATCTACGTGCAGCATTTCATGAACACAAAGAGGACGTGTTAGGTGCGCTAAGAGATTGTCGTGCTGCGCTCTCAGTGGATCCAAACCACCAAGAAATGTTGGAACTTCATAATCGAGTCAATAGACACGAGCCGTGA 2661 0.4171 MRSFFPAESCKETHPNALNPQSWLQIERGKLPKLSSYPSSASIESLVKVPQPALLPFYKPADYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQKANTVHEKIIFGAWLKYEKQEEELIADLLANCGKCAKEFAPVDIPSHLPFDVNVSSIGRMTNENCISQNVTFTIGDEEIVCDRQKISELSAPFNAMLKGYFSESRAETIDLSENNISPFGMKAISIFSLTGSLIEVPPNLLLEILAFANKYCCERLKDACDRRLASMVSSKEDAVELMEYALDENSTVLAASCLQVLLRDLPNCLNDSRVVEIFVHANKQQLAVMVGPGIFALFCFLSEVSMNLNSSSDKTVHILERLVEFAENDKQRILALHQLGCVRLLRKEYDEARLLFEGAVNAGHIYSVAGLARLDFIKGDKFLSYELLSSVISSVTPLGWMYQERSLYCDSDKRWDDLEKASNLDPTLAYPYMYRAASLMSTQNAQAALSEINRILGFKLSLECLEIRFFTHLTLEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGILYFRQSLLLLRLNCPEAAMRSLQLAQQHASSEHERLVYEGWILYDTGHYEEGLQKAEESISIKRSFEAFFLKAYALADSSIDPSCSPIVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKAAAYREMTELIKKAKNNASAYEKRSEYCDREQAKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHNRVNRHEP* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0135 886 SUPERFAMILY TPR-like 359 503 IPR011990 GO:0005515
Vra3g0135 886 Gene3D Potassium Channel Kv1.1; Chain A 169 319 IPR011333 -
Vra3g0135 886 Gene3D Tetratricopeptide repeat domain 785 885 IPR011990 GO:0005515
Vra3g0135 886 SUPERFAMILY TPR-like 692 877 IPR011990 GO:0005515
Vra3g0135 886 PANTHER ETO1-RELATED 1 886 IPR044631 GO:0010105
Vra3g0135 886 SUPERFAMILY TPR-like 466 738 IPR011990 GO:0005515
Vra3g0135 886 Gene3D Tetratricopeptide repeat domain 596 784 IPR011990 GO:0005515
Vra3g0135 886 SUPERFAMILY POZ domain 177 275 IPR011333 -
Vra3g0135 886 Gene3D Tetratricopeptide repeat domain 354 546 IPR011990 GO:0005515
Vra3g0135 886 SMART tpr_5 709 742 IPR019734 GO:0005515
Vra3g0135 886 SMART tpr_5 380 413 IPR019734 GO:0005515
Vra3g0135 886 SMART tpr_5 635 668 IPR019734 GO:0005515
Vra3g0135 886 SMART tpr_5 601 634 IPR019734 GO:0005515
Vra3g0135 886 SMART tpr_5 838 871 IPR019734 GO:0005515
Vra3g0135 886 Coils Coil 754 781 - -
Vra3g0135 886 PANTHER ETO1-LIKE PROTEIN 1 1 886 - -
Vra3g0135 886 ProSiteProfiles TPR repeat profile. 709 742 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0135 Vra-Chr3 1525390 1534714 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0135 - - gmx:100793740 1636.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0135 3 1525390 1534714 Vra8g1105 8 25705980 25710678 PCT