Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1098 ATGGCAAATGCATGGACAGAAGATCAAATAGCTATATTCCATGAAGCCTTTGATGTTGTTGACAAGGATTCTGACGGTTTCATTACTGTGGAAGAACTGATATCCATTGTTCAGTCATTAGAAGGAAACACAACAAAAGAAGAAATTCAAGAAATGATTAGTAAAGTCGATATGGATGGAAAAGGAAGCGTAAATTTTGAAGAGTTCTTGAATGTTATCGGAATGAGAATGAAGGAAAATCTGACCGAAGAGCTAAAAGACGCGTTCAAAGTGTTTGACAGGGATAATGATGGGTACATATCAGCTACTGAGTTGCGACATGTGATGATGAAATTGGGAGAGAGGCTAACAGAAGAAGAAGTTGAACAAATGATTCGCGAAGCAGATTTGGATGGAGATGGTCGAGTTAGCTACGACGAATTTGCAAGATTTATGTCACTAAATTGA 447 0.3781 MANAWTEDQIAIFHEAFDVVDKDSDGFITVEELISIVQSLEGNTTKEEIQEMISKVDMDGKGSVNFEEFLNVIGMRMKENLTEELKDAFKVFDRDNDGYISATELRHVMMKLGERLTEEEVEQMIREADLDGDGRVSYDEFARFMSLN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1098 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Vra8g1098 148 Gene3D - 123 148 - -
Vra8g1098 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Vra8g1098 148 PRINTS Recoverin family signature 52 73 - -
Vra8g1098 148 PRINTS Recoverin family signature 76 95 - -
Vra8g1098 148 PRINTS Recoverin family signature 98 116 - -
Vra8g1098 148 CDD EFh 84 146 IPR002048 GO:0005509
Vra8g1098 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Vra8g1098 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Vra8g1098 148 Gene3D - 79 122 - -
Vra8g1098 148 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 146 - -
Vra8g1098 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Vra8g1098 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Vra8g1098 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Vra8g1098 148 Gene3D - 1 78 - -
Vra8g1098 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Vra8g1098 148 SMART efh_1 12 40 IPR002048 GO:0005509
Vra8g1098 148 SMART efh_1 84 112 IPR002048 GO:0005509
Vra8g1098 148 SMART efh_1 120 148 IPR002048 GO:0005509
Vra8g1098 148 SMART efh_1 48 76 IPR002048 GO:0005509
Vra8g1098 148 Pfam EF-hand domain pair 14 72 IPR002048 GO:0005509
Vra8g1098 148 Pfam EF-hand domain pair 83 146 IPR002048 GO:0005509
Vra8g1098 148 SUPERFAMILY EF-hand 4 146 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1098 Vra-Chr8 25453989 25455072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1098 84 146 EF-hand Containing Proteins AT3G56800 46.032 1.39e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1098 K02183 K13448 gmx:100778454 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0141 3 1614770 1615557 Vra8g1098 8 25453989 25455072 PCT