Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0141 ATGGCAGGTGCAATGACAGATGATCAAATAGCTGAATTCCAAGAAGCCTTTTGCCTCATTGACAAGGATTGTGATGGATTCATTAGCGTGGACGAATTGACAGCCGTTTTCCGATCAATAGTAGGGAACCCGACAAAAGAAGAAATCCAAGACATGATCAGTGAAGTGGACCTCGATGGGAATGGAAGTATAGATTTTGAGGAGTTCTTGAATATTATGAGTAGAAAAATGAAGGAAACTTTATCTGAAGAGCTGAAAGAAGCCTTCAAAGTGTTTGATAGAGATCAAGACGGATACATATCTGCCATTGAGCTGAGGCATGTGATGATGAATATGGGAGAGAGGCTGACAGACGAAGAGGCAGAACAAATGATTAGAGAGGCAGATTTGGATGGGGATGGGCAAGTTAGCTTTGACGAATTTGCAAGGATTATGATGCTCAAATGA 447 0.4139 MAGAMTDDQIAEFQEAFCLIDKDCDGFISVDELTAVFRSIVGNPTKEEIQDMISEVDLDGNGSIDFEEFLNIMSRKMKETLSEELKEAFKVFDRDQDGYISAIELRHVMMNMGERLTDEEAEQMIREADLDGDGQVSFDEFARIMMLK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0141 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Vra3g0141 148 Gene3D - 1 77 - -
Vra3g0141 148 CDD EFh 84 146 IPR002048 GO:0005509
Vra3g0141 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Vra3g0141 148 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Vra3g0141 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Vra3g0141 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Vra3g0141 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Vra3g0141 148 Pfam EF-hand domain pair 12 74 IPR002048 GO:0005509
Vra3g0141 148 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Vra3g0141 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Vra3g0141 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Vra3g0141 148 SUPERFAMILY EF-hand 4 146 IPR011992 -
Vra3g0141 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Vra3g0141 148 SMART efh_1 84 112 IPR002048 GO:0005509
Vra3g0141 148 SMART efh_1 120 148 IPR002048 GO:0005509
Vra3g0141 148 SMART efh_1 12 40 IPR002048 GO:0005509
Vra3g0141 148 SMART efh_1 48 76 IPR002048 GO:0005509
Vra3g0141 148 Gene3D - 78 148 - -
Vra3g0141 148 PRINTS Recoverin family signature 52 73 - -
Vra3g0141 148 PRINTS Recoverin family signature 76 95 - -
Vra3g0141 148 PRINTS Recoverin family signature 98 116 - -
Vra3g0141 148 PANTHER CALMODULIN-LIKE PROTEIN 9 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0141 Vra-Chr3 1614770 1615557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0141 1 148 EF-hand Containing Proteins AT3G56800 65.772 1.14e-68 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0141 K02183 K13448 gmx:100527005 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0141 3 1614770 1615557 Vra8g1098 8 25453989 25455072 PCT