Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1058 ATGTCTGGAGAAGTTTATGACGGACAAGAGGCTGGCTATGTGCCTGAGAACCCCGAGTTTCCTCAAAATCATTCTGAGGAACATGATGGAGGAAATGTGATTGATGACTCAGGGTTTCCGCAACTGCAGCCCGATGAACATGATGAGGCCAATTTGGCCGTGGATGCTGATGTTCCCGAAAATAATTTTGATGGGAATGATGGAGAAGGTTTGCCTGAAAACCCTGATTTTCCTCCGCAAGAACATGCTGAGGAACAGCATGTTGAAGGAGATATGACTGAGAATTTAGGCTCTGAGGAGAAACAGGAATCTCAGGAGGAGTTGAAAGGAGGTGAAATAAAAAAATGGCCAGGGTGGCCTGGGGAAAATGTTTTCAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGTCGTAAAGGCGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATTCTTGATGGTCCCCCTGGAACTGCAGAAAGAGCTGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCACCATACCTCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAGGTTGTCAATGTAGAGCCTCATCCTGCTGATGGTGCATCAGGTGCAGGAATCACAGTTATTACAAGGCTTCTAGTGGCAGATACTCAAGCAGGGAGCTTGATTGGGAAACAGGGAGCCACCATAAAATCCTTTCAAGATTCCACAGGTTGCAATATACGTGTTCTTGGTTCAGAACACCTCCCAGTGTTTGCTCTGCGAGACGATAGTGTTGTTGAAATACAAGGAGAATCCTCTGGGGTTCACAAGGCAGTTGAACTTGTTGCAGTTCATCTACGGAAATTCTTGGTTGACCGTAGCATAGTTGGTGTATTTGAAACACAGATGCAAAGGCCAGATGTTCGGGCAAACCAGAATGTGCCACATGGTCCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCCAGCTCCTGGACCTGTTAGTGGTGGTGCACCTGCTTTCCCACCCAATCCTCAGTATATGCCCCCTTCGCATAACTATGATAATTACTACCCACCTGCTGATCTGCCTCCCATGGACAAGCACCTACATCAGGGTCCTCCACCTGCCTATGGAAGAGATGCTTCCATGGGAATTCATTCATCCAGTGCGCAACCGCAACAATCTGTTGTGACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCCTATGCAGATGCTGTTATTGGAGCATCAGGGACAAACATCAGCTACATCCGTCGTGCCAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCCGGGGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAACTAGTGCAGAATTTCATGGCTGAAGCTGCTAGTGCAACTCAGGAACATATGGGGGGATCAATGAACCAAGGTTACAATTCCTATCCTACCAGTGCTCCTGTCTACCCATCTCCGCCCTCAAGCGCTGCTGGTCATGCAGGCCATGTACCTTCCGCAGATTATGGACCCGTTTATGGCACCAATTATGGCTATTGA 1584 0.4735 MSGEVYDGQEAGYVPENPEFPQNHSEEHDGGNVIDDSGFPQLQPDEHDEANLAVDADVPENNFDGNDGEGLPENPDFPPQEHAEEQHVEGDMTENLGSEEKQESQEELKGGEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMVSAKEEPDRTIPPAVDGLLRVHKQVVNVEPHPADGASGAGITVITRLLVADTQAGSLIGKQGATIKSFQDSTGCNIRVLGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAVHLRKFLVDRSIVGVFETQMQRPDVRANQNVPHGPPHQPWGPPQGFPAPGPVSGGAPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPPPAYGRDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASATQEHMGGSMNQGYNSYPTSAPVYPSPPSSAAGHAGHVPSADYGPVYGTNYGY* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1058 527 MobiDBLite consensus disorder prediction 1 116 - -
Vra8g1058 527 Pfam KH domain 403 466 IPR004088 GO:0003723
Vra8g1058 527 Pfam KH domain 125 177 IPR004088 GO:0003723
Vra8g1058 527 Pfam KH domain 216 282 IPR004088 GO:0003723
Vra8g1058 527 Gene3D - 122 291 - -
Vra8g1058 527 ProSiteProfiles Type-1 KH domain profile. 213 282 - -
Vra8g1058 527 Coils Coil 458 478 - -
Vra8g1058 527 CDD PCBP_like_KH 124 193 - -
Vra8g1058 527 Gene3D K Homology domain, type 1 388 477 IPR036612 GO:0003723
Vra8g1058 527 CDD KH-I 403 466 - -
Vra8g1058 527 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 54 521 - -
Vra8g1058 527 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 54 521 - -
Vra8g1058 527 MobiDBLite consensus disorder prediction 78 113 - -
Vra8g1058 527 CDD PCBP_like_KH 217 283 - -
Vra8g1058 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 472 IPR036612 GO:0003723
Vra8g1058 527 ProSiteProfiles Type-1 KH domain profile. 401 465 - -
Vra8g1058 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 177 IPR036612 GO:0003723
Vra8g1058 527 MobiDBLite consensus disorder prediction 318 350 - -
Vra8g1058 527 MobiDBLite consensus disorder prediction 307 394 - -
Vra8g1058 527 ProSiteProfiles Type-1 KH domain profile. 122 189 - -
Vra8g1058 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 211 295 IPR036612 GO:0003723
Vra8g1058 527 SMART kh_6 400 470 IPR004087 GO:0003676
Vra8g1058 527 SMART kh_6 212 287 IPR004087 GO:0003676
Vra8g1058 527 SMART kh_6 121 194 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1058 Vra-Chr8 24682066 24687899 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1058 K21444 - gmx:100818363 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1058 8 24682066 24687899 Vra8g1058 8 24682066 24687899 ECH
Vra3g0163 3 1848583 1853285 Vra8g1058 8 24682066 24687899 PCT