Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0163 ATGGCCGAGCATGGTTTTGATGGTCACGATGAAGGATATGTGCCCGAGGACCCTAATTTTCCTCATAATCACTCCGATGAACATGATGTAGGGACTGTTATTGATGGCTCTGGATTTCCTCATCTGCTGCCTGATGAACATGATGCAGTCGATTTGGTGGAGGAGGATGCCGATTTTCCTCAAAATCATTTTGATGAACATGAACACGATGCTGAAGGTTTGCCTGGGGACACGGACTCTCCTCAACAGGCGCATGTTGAGGAAGACCATGGTGCTGGAGAAATGTCTGTGAATTTTGATCCTTTGCCTATAGAGGGATCCGAGACTGATTTGAAAGGGATTGAAATAAAAAAGTGGCCGGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTCGGCAGTATTATTGGCCGAAAGGGTGAGTTTATAAAGAAGATCACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCGCCTGGAATTTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGACCGGCCCATACCACCTGCTGTTGACGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACCTTGCAGATAGCGCTTTGACTGCTGGACGATCAGTTGTTACCAGGCTTTTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGTTCTGGTTGCACCATACGAGTTCTTGGTTCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGATTCTACTGGTGTTCACAAGGCAATTGAACTTATTGCAGTACATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTCGAGACACAGATGCAAATATCAGATGTCAGAGCTAACCAGAATGGACCACCACATCAAAATTGGGGTCCTCCTCCGCAAGGGTTTCCTGCTCCTGCTGGTGGTGGTGGTGGAGGACCTGCTTTTGCACCCAATCAACAGTATATGCCACCTACACATCACTATGATAGTTATTACCCGCCCACAGAGTTGCCTCCCATGGATAAGCACCTTCATCAAGGTCCACCACCTGTCTATGCAAGGGATGCTTCTGTTGGAATTCATTCATCAAGTGCGCAACCACAACAATCTCTTGTAACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCGTATGCAGATGCTGTTATTGGAGCATCCGGCACTAATATCAGCTATATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAAGAAACAAGGGGTGTTCCGGGGGAGATGACTGTCGAGATGAGTGGGACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAATGCGACACAGGATCCTCTGGGTGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCGGTTTACGCATCTCCACCGTCTAGCACTGGTGCTCATACAGGCCACGTGCCTTCTGCAGATTATGGGCCCGTATATGGCACCAATTATGGGTATTGA 1587 0.4675 MAEHGFDGHDEGYVPEDPNFPHNHSDEHDVGTVIDGSGFPHLLPDEHDAVDLVEEDADFPQNHFDEHEHDAEGLPGDTDSPQQAHVEEDHGAGEMSVNFDPLPIEGSETDLKGIEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAVDGLLRVHKQVINVDRDLADSALTAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAIELIAVHLRKFLVDRSIVGVFETQMQISDVRANQNGPPHQNWGPPPQGFPAPAGGGGGGPAFAPNQQYMPPTHHYDSYYPPTELPPMDKHLHQGPPPVYARDASVGIHSSSAQPQQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANATQDPLGGSVSQGYSAYPTNAPVYASPPSSTGAHTGHVPSADYGPVYGTNYGY* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0163 528 CDD PCBP_like_KH 218 286 - -
Vra3g0163 528 Coils Coil 459 479 - -
Vra3g0163 528 CDD PCBP_like_KH 127 196 - -
Vra3g0163 528 ProSiteProfiles Type-1 KH domain profile. 402 466 - -
Vra3g0163 528 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Vra3g0163 528 Gene3D - 125 294 - -
Vra3g0163 528 MobiDBLite consensus disorder prediction 316 338 - -
Vra3g0163 528 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 52 522 - -
Vra3g0163 528 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 52 522 - -
Vra3g0163 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 213 299 IPR036612 GO:0003723
Vra3g0163 528 MobiDBLite consensus disorder prediction 63 89 - -
Vra3g0163 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 393 473 IPR036612 GO:0003723
Vra3g0163 528 Pfam KH domain 219 285 IPR004088 GO:0003723
Vra3g0163 528 Pfam KH domain 128 180 IPR004088 GO:0003723
Vra3g0163 528 Pfam KH domain 404 467 IPR004088 GO:0003723
Vra3g0163 528 Gene3D K Homology domain, type 1 389 478 IPR036612 GO:0003723
Vra3g0163 528 CDD KH-I 404 467 - -
Vra3g0163 528 MobiDBLite consensus disorder prediction 1 27 - -
Vra3g0163 528 ProSiteProfiles Type-1 KH domain profile. 216 285 - -
Vra3g0163 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 120 179 IPR036612 GO:0003723
Vra3g0163 528 SMART kh_6 215 290 IPR004087 GO:0003676
Vra3g0163 528 SMART kh_6 401 471 IPR004087 GO:0003676
Vra3g0163 528 SMART kh_6 124 197 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0163 Vra-Chr3 1848583 1853285 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0163 K21444 - gmx:100799901 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0163 3 1848583 1853285 Vra8g1058 8 24682066 24687899 PCT