Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0858 ATGTACTATGCTGTTCTTCTCGTTCCTATGGAGTTCGCAAGGACTATGTTCTGTTCGTCTCCACCGTTTCCTCCAAGAAGTCACCCTTGGAACACTCACTCCTCGTCCTCTTCTACTTCCGTTTTGATGCTTCGTGAACAAGCTTCCACTGCAGTTGCCTCTTGGTCCTCTAATTTTTCAGCACAGAATTTCCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTCTTCTTCACATGTCTAAGGAAGACAAAACATCTCAGGCAATTTTAAATACAAGGCAGATGGATGTGGACACGGTTCATGAAGAGAATAACACTGGAAATGCTGACCAGGTAGTGCTGGACTTTAGGAAGCACCTGCATCTCTGGCCTCGTTTACAGAACTTATTAACTTCATCCCAAACAGGAGAAATTGCTGCTTCTTCAACTCTACAGCATATTTCTGTTGACTCGGAGAGACAGACAGATAGTGTGCAATGTAATGGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACCGCAAAACAAGCATCCTTAGTTGTTGAAGGCCTGAAATCAACTAAAGCTGATGATGATTCAATTCCTTTTGGTCTGGCTTCCACTAGTTTGGCGGACCCTTCGATTGGAAGAAATAAAACTGTGAGGTCAAAGCGGCTTTTAGAGAGACGAGCAAAACAAAGAAAAGTACCTAAGTCGGTAGTTAAAGATGATGAAGCCTACGATACAAGAAAGGATGGTTCTCAAGAAAGGCTACGCAAAGAAAAGAACATAAATGAAGAATTTGATCACAATGATACCCTACGCATGTTCTTGAGGGGTCCTGAAACAAAACAACTTTTGACACTTGAACAAGAATCTGAACTGATTTCTCAGATACAGGACTTATTGAAATTGGAAGAATTGAAGACCAGACTCCAATCTCAATTTGGTAGGGAACCAACTATGGCTGAATGGGCTGAGGGTGCGGGACTTAACTCTCGAAAGCTCCATGCTCAGCTTCATCATGGAAACAAAAGCAGAGAAAAGTTGATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGTAGTATGGGCCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGCCGGTTCCCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAAGCGGTGTTTAGACATTCCAGGACGATCCGTCTGCCGGAGAAGGTATATATCCAATTGGGCAAGGTAATGGAAGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGATTGACAAATTACTATATTCTGCAAGAACTCCAATTTCTATGCAGAAAACTGTGTGGGCTGACCAAGATACAACTTTCCAGGAGATTACTGCAGATCCCACAGTTGAGGCCACAGACTTGAGTGTTGAAAAACAGCTTATGAGGCGGCATGTGCTCAATGTCCTAACTATCTTGCGCCCCAAAGAAAGGAAAATAATCCGACTAAGATATGGGTTTGAAGATGGTGAACAGAAATCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCATTATATAAGCTTAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTTTATAA 1749 0.4174 MYYAVLLVPMEFARTMFCSSPPFPPRSHPWNTHSSSSSTSVLMLREQASTAVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAILNTRQMDVDTVHEENNTGNADQVVLDFRKHLHLWPRLQNLLTSSQTGEIAASSTLQHISVDSERQTDSVQCNGVSLAKKALSTAKQASLVVEGLKSTKADDDSIPFGLASTSLADPSIGRNKTVRSKRLLERRAKQRKVPKSVVKDDEAYDTRKDGSQERLRKEKNINEEFDHNDTLRMFLRGPETKQLLTLEQESELISQIQDLLKLEELKTRLQSQFGREPTMAEWAEGAGLNSRKLHAQLHHGNKSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYIQLGKVMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLYSARTPISMQKTVWADQDTTFQEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0858 582 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 492 IPR013324 -
Vra8g0858 582 PIRSF Sigma_factor_SigC 10 582 IPR016262 -
Vra8g0858 582 Gene3D - 419 496 IPR036388 -
Vra8g0858 582 Gene3D - 263 415 - -
Vra8g0858 582 ProSitePatterns Sigma-70 factors family signature 1. 370 383 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 13 582 - -
Vra8g0858 582 CDD Sigma70_r4 508 566 - -
Vra8g0858 582 Pfam Sigma-70 region 3 427 495 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 Pfam Sigma-70, region 4 515 567 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 342 569 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 MobiDBLite consensus disorder prediction 229 259 - -
Vra8g0858 582 PRINTS Major sigma-70 factor signature 370 383 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 PRINTS Major sigma-70 factor signature 394 402 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 PRINTS Major sigma-70 factor signature 518 530 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 PRINTS Major sigma-70 factor signature 539 554 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 PRINTS Major sigma-70 factor signature 554 565 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 Pfam Sigma-70 region 2 346 415 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 479 578 IPR013324 -
Vra8g0858 582 MobiDBLite consensus disorder prediction 225 259 - -
Vra8g0858 582 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 266 416 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 13 582 - -
Vra8g0858 582 ProSitePatterns Sigma-70 factors family signature 2. 539 565 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra8g0858 582 Gene3D - 501 581 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0858 Vra-Chr8 18209583 18215391 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0858 - - gmx:100306289 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0858 8 18209583 18215391 Vra8g0858 8 18209583 18215391 ECH
Vra3g0425 3 4943184 4948121 Vra8g0858 8 18209583 18215391 PCT