LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra3g0425	ATGTTCTCTTCCTCTCCACCGTTTCCTTCATCTTCTTCGCCTTCAGTTATGATGCTTCATGAACAAGCTGCTCCAGCAGTTGCATCCTGGTCTTCTACTTCTACAGCTCGGCATTTTCCTACCTCTGTTCTCTTACAAGAACAGCGTGAGGAGTATAGGCCCCTACTGCACGCGTATAATAAGGAGGCAACGTTAAATACAAGGCAGATGGATATGTCCTCAGTTCAAGAGAAATGCAACACAGGCAATCCTGATCAGTTAGTGCATGATTTTGTTCACCAGTTGCATCTCCGGTCTCATTTACAGAACTTACTGACTTGTTATCCTACTAGGGAAATTGCTGCTTCTTTGACTCTTCAGCCTGTTGATAACGATTCAGAGAGGCCTGCAGATGGTCTGCCAAGGAATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCCTCAAAGCAAGCGGCTTCATCAATTGAAGTTGATGATGATGATGATGATCCACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGTTGACTCTTCACTGAAAAGGAATAAAATTGTGAGATCAACACGGATTACAGAAAGACGATCTAAACAGAGAAAAGCATCAAAGTCAAATCTTCTTGATGAAGAAAGTTACCTTGACAGAAAATCTTTTGTACAGAGAAAGCTACGTTTAGAAAAGAAATTAAATGAAGGATTTGATCAAAATGACCCCCTACGCATGTTCTTGTCGGGTTCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTTCAGGATTTCTCAAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGACGGGAACCAACTTTAGCTGAATGGGCTGATGTCTTGGGCCTTAGTTGTTGTGCCCTGCAGACACAGCTTCATTGTGTTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATATGCGCATGGTAGTACACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGCACGGGTCTTATGAAGAGCATTGACAAATTTAAACCAGGAGCTGGTTGCCGATTTGGTACTTACGCATACTGGTGGATAAGGCATTCAATAAGGAAGGCGATATTTCTGCATTCCAGGACTATCCGTATACCGGAGAATTTATATAGACTTTTGGGCAAGGTCATAGAAGCAAAGAAATTATTCATTCAGGAGGGAAACATTAACCCATCCAAAGAAGAATTAGCAAGAAGGGTGGGAATTACAATAGACAAGTTGGAAACTTTAGTATTTGCTTCAAGAAATCCAATTTCCATGCAGCAAGCTGTATGGGCGGACCAAGAGACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGATGTGTGTGTTTCAAGACAGCTAATGAGGAGGCATGTGCACAACCTCCTAAATATGTTAAGCCCTAAAGAAAAGAGCATAATCAGGCTAAGATTTGGTATTGAAGATGGCAAGGAAAAAACGTTGTCAGATATTGGCAAGGTTTTTGGTTTGACCAAGGAAAGAGTCCGACAGTTGGAGAGCCGAGCATTGTCCAAGCTCAAGGAGTGTCTTGAAAGTCAAGGACTTGACGCATACACAGACTTGCTTATATAG	1653	0.4223	MFSSSPPFPSSSSPSVMMLHEQAAPAVASWSSTSTARHFPTSVLLQEQREEYRPLLHAYNKEATLNTRQMDMSSVQEKCNTGNPDQLVHDFVHQLHLRSHLQNLLTCYPTREIAASLTLQPVDNDSERPADGLPRNAVSLAQQALSASKQAASSIEVDDDDDDPLSFGLASTSLVDSSLKRNKIVRSTRITERRSKQRKASKSNLLDEESYLDRKSFVQRKLRLEKKLNEGFDQNDPLRMFLSGSESRQLLTREEESQLITQLQDFSRLEEVKIRLQSQLRREPTLAEWADVLGLSCCALQTQLHCVNRSKEKLFHANMRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIDKFKPGAGCRFGTYAYWWIRHSIRKAIFLHSRTIRIPENLYRLLGKVIEAKKLFIQEGNINPSKEELARRVGITIDKLETLVFASRNPISMQQAVWADQETTFQEITADSAIEIPDVCVSRQLMRRHVHNLLNMLSPKEKSIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLESRALSKLKECLESQGLDAYTDLLI*	551

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra3g0425	550	CDD	Sigma70_r4	476	534	-	-
	Vra3g0425	550	ProSitePatterns	Sigma-70 factors family signature 2.	507	533	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	Gene3D	-	169	383	-	-
	Vra3g0425	550	TIGRFAM	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	312	537	IPR014284	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	Pfam	Sigma-70, region 4	483	535	IPR007630	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	Pfam	Sigma-70 region 3	394	466	IPR007624	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	Pfam	Sigma-70 region 2	314	378	IPR007627	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	Gene3D	-	469	549	IPR036388	-
	Vra3g0425	550	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	387	460	IPR013324	-
	Vra3g0425	550	PRINTS	Major sigma-70 factor signature	338	351	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	PRINTS	Major sigma-70 factor signature	362	370	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	PRINTS	Major sigma-70 factor signature	486	498	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	PRINTS	Major sigma-70 factor signature	507	522	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	PRINTS	Major sigma-70 factor signature	522	533	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	PANTHER	RNA POLYMERASE SIGMA FACTOR RPO	8	550	-	-
	Vra3g0425	550	Gene3D	-	387	464	IPR036388	-
	Vra3g0425	550	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	448	546	IPR013324	-
	Vra3g0425	550	SUPERFAMILY	Sigma2 domain of RNA polymerase sigma factors	234	384	IPR013325	GO:0003700\|GO:0006352\|GO:0006355
	Vra3g0425	550	PANTHER	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	8	550	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra3g0425	Vra-Chr3	4943184	4948121	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra3g0425	-		-	gmx:100793539	883.634

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra3g0425	3	4943184	4948121	Vra3g0425	3	4943184	4948121	ECH
	Vra3g0425	3	4943184	4948121	Vra8g0858	8	18209583	18215391	PCT