Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0783 ATGGAGGTTGGGGAGATGGATGGAAAGGAGCCACAAGTTGAGGTTCCTTTGGCACCTGCCACCCTTATTAAGCCTGTTCCTCTAAAACCAGTGCCGATCTACACGCCTGGGGTGATTAACCAAATGGGTTATCATGCAAATGGGGCAGTTGCATGTGTTGAATTTTCAATTGGCCAGGAGAAATTGTGTAGGTCAGATATTGGGTCAGACGTCGCGCGTGACAGTGCCAAAACTGCCGAACATACAGTTTCGGAAGCTACTTCCAGCTTCAGCAAACTCGGGTTTTGTGAACATTTGTTCGCAGTTGAGGCTGAATCGAGGAACTCTAGTGTGACAAAAGGGACTAATGAAGGATTCAACAATCCATTTGTCCCTTCTTTCATCCATGACAACATTCAGGACCCTCAGGAAACATACATTGCTTGCTGTAGCAACAGAATTTCACAGGATACCCCATTTACACTTGACAATGCGGACAAAGAAAGCAGACAAATAGCATCAATGCAAATCAATATGGAAGAAAATGATCCAGGTGGGGAAGAGAGAAATGGCCCTGCCAGTAAGCTTGACAGTAATGTACTGCCAGGCAGCAAAGAACTCTGTGACCCTATCATGGAATTCGCTGCTATTTCTTCACCACTCAAGGAGAATCAAAACCAGGATAAGGGAAGCAATCTTGAAAGTAATATTAATAAAACACCACAACAAAAACCAAGGAGAAGAAAACACCGTCCCAAGGTCATCAAAGAAGGCAAACCCAAAAGAACTCAGAAGCCTGTTACCCCAAAGCCTGTTCAATCAAAAGGAAACCCAACTGTGAAGAGGAAATATGTGAGAAAGAATGCATTGACCAAGACTTCTATTCCTCCAACGGAAGTGACTAGCGAATTGACAAAAGAAATGCCTGAAACTGCCAAAACGTCTTGTAGAAGGGTCATAAATTTTGACATGGGAGCAAGAGATGAAAGTTCTGCTGGCATAGAAAACATAACTGCACTGTTGGGAAAAGAAAATGGCGTGAATGTGGGCCTTGCAGATGATCTGAACACTTCTGTGAAGCAGGCATCAAACAGTTATTCATCAATACCAGAAGACACGCAAGCCCAAAATGCATTTCCTTCGGGAAGAAAAGAATCAGGGACAAAACCAGAGGAAAAACCAGCTGCAAAGAGGAAGTATGTGAGAAGGAAAGGAGTGAGCATGACTTATACTCCTGCAGCAGAAATTACTAAAGGGATGCCCCAGTCCACCCAAATGCCATGTACAGAGTTGAGAAATTTTGATGAAAGAACCAGAGATCAAAGGTGTGAAGTCAAAGAGCATGCAACAGTATGTACTGGTAGTGAAATTGGTGTAATCAGGCAAGAAATGAATGCAGGCCTAGCAAACTATTTAAACACTTCCATTACGCAGCCATCAAACTATTGCAAGTCTTTAGCAGAAGACTCACGAGCCCTAAATACATCTTCAGGAAGAAAATGCTCTGTGACAGAACCAGAGGAAAGCTCAGTTGTTAAGAAGAATACAAGGAAAAAGGTGAATTCGACTTCTCCAACAGAACTGGCTGGAGAAATGATTACAGAAAATGTGCCTGGATCGGCCCGAGAGAATCCAATTGTCATTCCAGGTAGTGAAATTGGTGTAGCCATGCAGGATACTAATGTAGGATTTGTCTATGATCTAAACACTGACATGAAGCTGGCATCAAACACTTACGTGTCATTACCAGAAGAAACACAAGCCACAAATACATATTCAAGAAAAAGAAGATCTGGGACAAAGCCGAACGAAAACCCAACTGCCAAGAGGAAGTATGTGAGAAAGAAAGGGGTGAAGACATCTGCTCCTCCAATTGAAGTACCAGGAGAATTGACTAGAGAAAACATGTCAGTATCTGCCCAAACATTATGCACACAATCCACAAATTTTGATGAAAGAGAAAGAGAAAAAACTTATGCAGTCAAAGAAAATCTAAGTAGACATCCAGGCAGTGAAATTGGTGTAGTCATGCAGGAAATGAACGTAAGCCTTGCCTATGATTTAAACACTTCCATGAAGCAGACAGTATATGAAGACATGACATTACCTAAGGACGCACAAGCCCCAGGTCCATCTTCAAAAATGAATCTCCCTGGGACAAAGACAAAAGAAAACCTGACCACCAAGAGGAAGAATGTGAGGAAAAAAGTATCGGATCCGTCTCCTATTCCTTCAGAAATAACAGGATTGACTGAAACAGTGATAGTTCATTCTAACAATATGTCATGGAGGCCTTCAAATTCTGACATAGGAACTAGAGATGTAAGGTATGTACGGAGAGAAAATTTAAATTTGCACATGGGAAAGGAAAATGTGGTGTTAGAGGAAACAAAAGTAGGTCTCAAGTGTAATCAAGACCCTTGGATGAATGCAACATTAACTAATTGCAATCCATTACCTGACGGAATGCAACAACTTGGTACATCTCCTGGAGCTACACATCTTAGTACATCTATTTCAAAATACACCCACCTTGGGGCAACGGCTTGGGATGGAAACATCAGTAATAGTCAAAGTTCAACCATGAGGTTACAAATGAATGGTAGAAAGAGGAAATATTCTGGTAGCTTTAGTCATGCTGATGACAGCAGCATGAATCTGATTGGAGCACACTTTAATGGATTGTTATCATACAAGAATAGCTGCTACATTCAGTTTCCAAACATACAGAAGAAAAGGAGAACTAAAAAAGGGAAAACTTCTGGCAAGTACAACAAATCTGTGACTGCAACAAAAGTCCAACAGGCATACCCTCAGGAAGATGCTCTAGGACATCCTTATGCATCACGCCCTAGCTGCTGGAATTATGGATCTGGATATAATACGACAGCGGTCCCAGTCATTAGTGAATTTGCTGAAAATTTTATTGATAATACTAAAGCATTTATGTTGTCTTTGAAAAGGCGGGAAGAAAGGTCTCGAATCTCTAATTGTGGTTCTGGTTCTCCAACCAGTATTAGAAATGGTGATACTGGACCAAATTATAATACAAAACAAGTAGGGATACCTGCCAGAGAAACATTTGGGGATGCAAAAAGACCTCAAACATGCATTGATGCTTTAATCGCAGATACACCTACATCACTTCCAAAAAAGAAACGGAATAGAAAGAAAAAGGTCATTTCCAGTTCAGCACATTTTAGCACAAACAAGATGCTACATAATTTTACATGGGGAAAGCCATCAGATGTTGCTTCCGAAGTACTGTGGAAAACAATGAGCTATGTTGATGCATTAACGTTGCAGTTTAGACGACTAAACATAAACACAGAAGCCAGAGACCTCGCATTTTATGAGCAGAATGCACTTGTTCTGTATAAACAGCCAAATCGAAAGCAAAACAGCCTTATCCGTGGAGACGGGGCCATTGTTCCCCTTCAAATCAAGAAACAGCATCTACGACCAAAGGTTGACCTTGATGATGAGACCGATAGAGTGTGGAAGCTTTTGTTGCTTGATATAAACAGTCCTGGAATTGATGGAACAGATGAAGATAGGGCCAAATGGTGGGAAGAAGAGCGGAATGTGTTCCGAGGACGAGCAGACTCATTTATTGCACGGATGCATCTTGTACAAGGAGACAGACGATTTTCTCGATGGAAAGGATCAGTGGTGGATTCAGTGATTGGAGTTTTCCTCACCCAGAATGTCTCTGACCATCTTTCCAGCTCTGCTTTCATGTCCCTTGCTGCTCGATTTCCAAAAGATTTAGGCAGCATGTACAAAGCACACCAGGCTGAAGACACAAGGCTGGAACCACAAGTGCGTGTAGTGGAACCAGAAGAAGGGACTGAATGGAATGTAAAATTATTGAATCAATCTGTTTATGACCAGAGTTCTTTGACGACGGATATAGTTGAGCGTTCTGCAGAAAAAGAAGCCATCAACAGCAATGATTCATGTGGAACGACCAGCAGTGCAATTAGTCTGTCAGATGAATCAAACTCCAGATTGTCAGTATCATCTCAACAAAATATTAAGGAACACTGTAGTCCAATGGGAAGTGGACTATGTTGTTCCACAATTGAGGAAGGAGAAGAAAAATCATGTTATGATGATAGGAAAGAGTTGATTGATATAGTTTCATCCCAAGGCTCTGTCATTTCGTCTCAAATTTCTGGAGATTTTTCAAATGATCAAAATCCTGAGAAAATAGGAGCATGTTCAGATAGCAACTCGGAAGTAGAAGTTCTATCGAAAACAGCAAAGTACAACCATTATGATAGTAACACTTCTTTCAGTAAACTCCTCGAAATGGTTAGTTCAACCAAGTTTTATGAAGATAACAATCTGAAAAGCAAATCAAATCAGAACTTAAGAGATGCATATGATCAATCTTTATGCAGGCAGCATGACAACCCAAAAGAAAGCTTGCAAAAGTCAAGTGTTACTCATGGTCCTTCAGAAGCATCCATTAACCTGTCCCATGACTGCTTTGATCCTTTCAAAACCAAATCAAGTGACTTCTTGATGAAAAAGGATGAGAATGGCATGAACAGATCTAGTTCTCAAACAACAGAACCTGCCAGCCAAGTTGCAATTACTCTTTCTCAAGTCCATCCTCAGGAACAAAGCAATCACCAGCAACAAAGCTTTTTCAATTTCAACAGCCCTGGACAAACTCAAGATCTTATGCAGAAAGAAAGGGGATCAGATGTTGGCAAGCACAAAAATGCCACGAGGAATGGGGCCAATGAGATAAGTTCTTCGCCAATAAAAGTAAAGACCAAGGATCAAGGAAAAGATCAAAAGGTTGATTTTAACTGGGATAGTTTAAGAATAGAAGCACAAGCTAAGGCTGGGAAAAGAGAAAAGACAGAAAACACTATGGATTCTTTGGATTGGGATGCTGTGAGATGTGTAGATGTCAATGAAATTGCCAAGACCATCAAAGAACGGGGTATGAACAACAGGCTTGCAGAACGGATTCAGAATTTCCTGAATCGACTGGTTGAAGAACATGGAAGCATTGACCTTGAATGGCTGAGAGATGTTCCACCAGACAAAGCAAAAGAATACTTGCTCAGTGTAAAAGGATTGGGATTGAAAAGTGTGGAATGTGTGCGGCTTTTAACACTGCACCATCTTGCCTTCCCGGTAGACACAAATGTTGGACGAATAGCAGTACGATTGGGGTGGGTACCTCTGCAGCCACTGCCTGAAACACTGCAGTTGCATCTCCTAGAATTGTACCCAGTGTTGGAATCAATACAGAAATACCTCTGGCCCCGACTGTGCAAGCTAGATCAAAAAACACTATATGAGCTACATTATCAGATGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGCCCAATGAGAGGAGAATGTAGACATTTTGCTAGTGCATTTGCAAGTGCAAGGCTTGCACTGCCTGGACCAGAGCAGAAGAGTATAGTTAGCACAGCTGGAAATAGTGTGATTGACCAGAAGCCATCTGAAACCATCAGTCAGTTGCACTTGCCTCCCCCTGAGAACACAACCCAGGGAGAAGAAATTCAACTAACAGAAGTGTGCAGGCCATTGGAATCAAAATCAGAGATAAATATTTGTCACCCTATCATTGAAGAGCCAACAACTCCAGAACCAGAATGCTCCCAAGTATCACAGATTGATATAGAGGATGCTTTCTATGAGGATTCATGTGAAATTCCTACCATCAAGCTTAACATAGAAGAGTTCACTCTGAATTTACAAAATTACATGCAAGAAAAGATGGAACTCCAAGAAGGTGAAATGTCAAAGGCATTGGTTGCCTTGAATCCAGAAGCTGCTTCAATTCCTATGCCAAAGCTAAAGAATGTGAGCCGATTACGAACAGAGCACTGTGTTTATGAACTCCCAGATACACATCCTCTTCTGCAAGGGTGGGACACACGAGAGCCTGATGATCCAGGCAAATACCTTCTTGCTATATGGACTCCAGGTGAAACAGCAAATTCTATACAGCCACCAGAAAGCAAATGCAGCTCCCAAGAAGAATATGGCCAACTCTGTAATGAGAAGGAATGTTTTTCATGCAACAGTTTCCGAGAAGCTAATTCACAGATAGTTAGAGGGACACTCCTGATACCATGTCGAACAGCTATGCGGGGAAGTTTTCCACTGAATGGCACCTATTTCCAGGTCAATGAGGTATTTGCTGACCACGAGTCTAGTCTTAACCCAATCAGTGTGCCCCGAAGTTGGATCTGGAACCTAAATAGACGAACAGTATATTTTGGAACCTCCGTACCAACAATATTTAAAGGTTTAACAACTCAAGAAATTCAACAATGCTTTTGGAGAGGTTATGTCTGCGTGCGGGGATTTGACAGGGAAACACGAGCACCCCGTCCTCTGATGGCTAGACTACATTTCCCAGCTAGCAAGTTGGCTAAGACTAAAGAGAAGACCGAAAAGGGATCGAGTTCCGCAAAATCACGAGGAATGAAATCGAATGTAGAACAGCCGGAATTGATTTCTAACAGTAGCAACTTTTAA 6543 0.4157 MEVGEMDGKEPQVEVPLAPATLIKPVPLKPVPIYTPGVINQMGYHANGAVACVEFSIGQEKLCRSDIGSDVARDSAKTAEHTVSEATSSFSKLGFCEHLFAVEAESRNSSVTKGTNEGFNNPFVPSFIHDNIQDPQETYIACCSNRISQDTPFTLDNADKESRQIASMQINMEENDPGGEERNGPASKLDSNVLPGSKELCDPIMEFAAISSPLKENQNQDKGSNLESNINKTPQQKPRRRKHRPKVIKEGKPKRTQKPVTPKPVQSKGNPTVKRKYVRKNALTKTSIPPTEVTSELTKEMPETAKTSCRRVINFDMGARDESSAGIENITALLGKENGVNVGLADDLNTSVKQASNSYSSIPEDTQAQNAFPSGRKESGTKPEEKPAAKRKYVRRKGVSMTYTPAAEITKGMPQSTQMPCTELRNFDERTRDQRCEVKEHATVCTGSEIGVIRQEMNAGLANYLNTSITQPSNYCKSLAEDSRALNTSSGRKCSVTEPEESSVVKKNTRKKVNSTSPTELAGEMITENVPGSARENPIVIPGSEIGVAMQDTNVGFVYDLNTDMKLASNTYVSLPEETQATNTYSRKRRSGTKPNENPTAKRKYVRKKGVKTSAPPIEVPGELTRENMSVSAQTLCTQSTNFDEREREKTYAVKENLSRHPGSEIGVVMQEMNVSLAYDLNTSMKQTVYEDMTLPKDAQAPGPSSKMNLPGTKTKENLTTKRKNVRKKVSDPSPIPSEITGLTETVIVHSNNMSWRPSNSDIGTRDVRYVRRENLNLHMGKENVVLEETKVGLKCNQDPWMNATLTNCNPLPDGMQQLGTSPGATHLSTSISKYTHLGATAWDGNISNSQSSTMRLQMNGRKRKYSGSFSHADDSSMNLIGAHFNGLLSYKNSCYIQFPNIQKKRRTKKGKTSGKYNKSVTATKVQQAYPQEDALGHPYASRPSCWNYGSGYNTTAVPVISEFAENFIDNTKAFMLSLKRREERSRISNCGSGSPTSIRNGDTGPNYNTKQVGIPARETFGDAKRPQTCIDALIADTPTSLPKKKRNRKKKVISSSAHFSTNKMLHNFTWGKPSDVASEVLWKTMSYVDALTLQFRRLNINTEARDLAFYEQNALVLYKQPNRKQNSLIRGDGAIVPLQIKKQHLRPKVDLDDETDRVWKLLLLDINSPGIDGTDEDRAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPKDLGSMYKAHQAEDTRLEPQVRVVEPEEGTEWNVKLLNQSVYDQSSLTTDIVERSAEKEAINSNDSCGTTSSAISLSDESNSRLSVSSQQNIKEHCSPMGSGLCCSTIEEGEEKSCYDDRKELIDIVSSQGSVISSQISGDFSNDQNPEKIGACSDSNSEVEVLSKTAKYNHYDSNTSFSKLLEMVSSTKFYEDNNLKSKSNQNLRDAYDQSLCRQHDNPKESLQKSSVTHGPSEASINLSHDCFDPFKTKSSDFLMKKDENGMNRSSSQTTEPASQVAITLSQVHPQEQSNHQQQSFFNFNSPGQTQDLMQKERGSDVGKHKNATRNGANEISSSPIKVKTKDQGKDQKVDFNWDSLRIEAQAKAGKREKTENTMDSLDWDAVRCVDVNEIAKTIKERGMNNRLAERIQNFLNRLVEEHGSIDLEWLRDVPPDKAKEYLLSVKGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPETLQLHLLELYPVLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVSTAGNSVIDQKPSETISQLHLPPPENTTQGEEIQLTEVCRPLESKSEINICHPIIEEPTTPEPECSQVSQIDIEDAFYEDSCEIPTIKLNIEEFTLNLQNYMQEKMELQEGEMSKALVALNPEAASIPMPKLKNVSRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESKCSSQEEYGQLCNEKECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPISVPRSWIWNLNRRTVYFGTSVPTIFKGLTTQEIQQCFWRGYVCVRGFDRETRAPRPLMARLHFPASKLAKTKEKTEKGSSSAKSRGMKSNVEQPELISNSSNF* 2181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0783 2180 Coils Coil 1911 1931 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 173 197 - -
Vra8g0783 2180 Gene3D Hypothetical protein; domain 2 1594 1701 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 355 396 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 1308 1329 - -
Vra8g0783 2180 CDD ENDO3c 1627 1745 IPR003265 GO:0006284
Vra8g0783 2180 MobiDBLite consensus disorder prediction 989 1009 - -
Vra8g0783 2180 SUPERFAMILY DNA-glycosylase 1192 1802 IPR011257 GO:0003824|GO:0006281
Vra8g0783 2180 SMART endo3end 1607 1779 IPR003265 GO:0006284
Vra8g0783 2180 SMART ccc3 1780 1800 IPR003651 GO:0051539
Vra8g0783 2180 MobiDBLite consensus disorder prediction 1466 1485 - -
Vra8g0783 2180 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 586 2156 IPR044811 GO:0019104|GO:0035514|GO:0080111
Vra8g0783 2180 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 135 369 IPR044811 GO:0019104|GO:0035514|GO:0080111
Vra8g0783 2180 MobiDBLite consensus disorder prediction 1306 1329 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 696 715 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 2159 2180 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 1532 1560 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 987 1009 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 578 603 - -
Vra8g0783 2180 Gene3D - 1702 1817 IPR023170 -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 215 276 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 235 251 - -
Vra8g0783 2180 Pfam Permuted single zf-CXXC unit 2005 2037 IPR028924 -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 355 376 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 215 233 - -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 2145 2180 - -
Vra8g0783 2180 Pfam RRM in Demeter 2040 2140 IPR028925 -
Vra8g0783 2180 MobiDBLite consensus disorder prediction 1532 1594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0783 Vra-Chr8 15398648 15410907 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0783 - - pvu:PHAVU_007G223600g 3435.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0509 3 5715714 5722601 Vra8g0783 8 15398648 15410907 PCT