Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0509 ATGTGCTATAATCCTCAAGGCAAAATAAATGGCCCGACTACAGAAGTGGCTGCTGTACATGCAGCGCAAAAGGATAAAAGCCGGGACTTCGATCTGAATAAAACGCCTCAACCAAAACAACCCAAAAGAAGAAAGCACCGGCCCAAGGTCGTAAAAGAAGGCCAACCAAAAAGAACAATCAAAAAAGCCGCTGCAAAGACTGTTCAATCTAAAGGAAACCAAGCTGACAAGAGGAAGGCAAGGAAAGGATTGAACACAACTCCTCCACAAACAGAAGTGACAGGAGAATGGACATCGGGGCCTAAATCAACCGTAAAGACATGTCATAGGTCCTTGAGTTTTGGGAGCAAAGAGCAAGCAATAGACGATCCTGGACGCAGAGAAAATATGCTCTTTGCCAATGCCAGCAGCTCAAGGAATAGGGCGGCTGATCATAATGGACTTCAAGAGTGTCCAAATAACTCCATTGGCAGAGACGGTTGGAGCACAGGATGCGGATTACAAGCTGCCGGCTCCAAGAGAAAACAACCTGGTATTGAACAGGCAGATAATACCAGCATTAATCTGTTAGGAGCACAATATAATAATCTGTTAGGAGCACAATATAATGACATGAAGGCATACTGCCTAAACTATGGGGTTCAATTTCCAAATGTTCAGAAGAAAAGGAGAAGCGTCAAGGGGAGAATTTCAGAGGCGCCAAGTAAATCTTCTGTGACTGCCACCAATGATGTCCAACTGGCAACATTCTTACAAGATGCCAGATCACATTCTTATATGTCAAGTCCCAAGTGCTGGGCTTCTGGTTCAGATTATACTGCAGCTGGAGTCCCACTCTTGATTACAGCTACAGAAAGAGCAATTAAGGACAAACATCAACCCCTCGAGTACACGTTATCCTTAGGGCAGAAGAGGCCAACCAAAAGAAGATCAAGAGCTTCTACAAGAACTGATGTTGGTCTAGCACATACTGCAAAGCAAACGTGTAGCTCTCACAGACGAACATTTGGTGATGCAGAAGGGCCACGGACATGCATTGATGCTCTAGTTGCAGATTTGGGAGCATCAATCACGAAAAAGAAACGAACAGGAAAGAGAAGCCCTGTCAATTATGCATCCTCCTGCAAAAATGAAAGACAAAACACATTAGCATGTGTGGACGAAGGGGAAGAAATTGAAATTGTGGACGAAAATGTAGACGCTTTGGCAGACCAATTTATTTTCCTAAACATCAACAGAGAAGCCCCAGAGCGTGAGTTGCATGAGCAGCATATGCTTGTTCCCTATAAACCCAAAAAAAGGAGCATAAGACCCAAAGTTGATATTGATGAGGAAACTAATAAAGTTTGGGCGCTTTTACTTAAGGATAGTAACAATAGTGGGATTGATGGAAGTGATGCAGAAAAGGCGATTAACTGGGAACTAGAACGGAAAGTGTATCGTGGAAGGGCAGAGAACTTCATTGCAAAGATGCATCAAATACAAGGAGACAGGGGCTTTTCGATGTGGAAGGGATCTGTTGTGGATTCTGTGGTTGGTGTTTTCCTCACTCAAAATGTATCAGACCATCTTTCCAGTTCTGCATTCATGGCACTCGCTGCTCGATTTCCTCTGAAGTCAACAAGTACACGCCACGAGGAAAGCACAAGTTCGCAAAAGAAAAGCACAGATGAATCAGACAGCAAAGAATCAGTTCAAAGACATAACAATGAACATAGCCCAGTGGATAGTGCAATGACTGAGGAAGGGCAAGAAAGCTTATGTCAGGGGAGCGTTAAGAAAGAGTTACATAATATAATTTCATCCCAACTGGCTGGCGTTACATCTCAGACATCTGGAGATTTTCCAACTGATCAAAATCCTGAAAAGATAGGACCATTCTCGGATAGCAACTCAAAAATAGAAGAACTGCCAAGCACAGCCCAGTTCAATATTTATTATAACAGGACTTCATTCAGGGAGCTTTTAGAAATGGCAAGTTCAACTATGTTGCATGATGTTGATGGTCAAAGAAGCAAAGCAACTGAAAGCTTTACAGGAAGAAGTGATCAGTCCATAGAACTGAACCATGACAACCAGATAGGAAACTTAGAAAAACCAGATGTTATTCCATACACTTTAGAAACACTCCCCACCAAAGAATATACTTTGCAAGTAACCCCAAATTCTGGAGCACTTCAAGTTAACGGATATGATCGTCTAACAGCAGAAGTCCCATCAAGTGACTCCTTGGAAGACAAGGATGAAAACAATAAGAAATATAATTTTCCAACAGAGTCCGACTCTAAAGGTGCAGTTGTCAATTCTCAAGGTATTCTATCCCAACTCCATCCCTTGCAGGAAATTAATCATGACCATAATCTTTTTCACATTTCAGAACAAACCCAAGAACCAAAGCAGAAAGAAAGAGAAAAAGATGTTGGTAATCCCAGCTATGAAAAGGGGAAAGGAGAGGGTAAGAAAAAATCTGCCTTGGTAAAACCAAAAAGCAAGAAAGAGAACAATTTTGATTGGGATAGTTTAAGAGTACAAGCCCAAGCTCAGGCAGGGAAAAGAGAAAAGACAGAGAAAACGATGGACTCTGTGGACTGGGATGCTGTGAGACGTGCAGATGTCAATGAAATATCCAACACAATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAACGTATTCAGAGTTTCCTCAATCTATTGGTTGACAAGCACAAGGGCATTGATCTTGAGTGGCTGAGAGACGTTCCACCTGACCAGGCAAAAGAATTCTTGCTCAGCATCAAGGGATTGGGATTGAAAAGTGTGGAGTGTATTCGACTCTTAACACTGCACCATCTTGCTTTTCCGGTGGACACAAATGTTGGACGTATAGCAGTACGTTTGGGATGGGTACCAATCCAGCCACTGCCAGAGTCACTACAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGATGCGGTACAAAAATATCTCTGGCCTCGTCTCTGCAAGCTAGACCAAAGAACATTGTATGAGCTGCACTACCAATTGATTACATTTGGAAAGGTATTCTGCACCAAAAGCAAACCGAATTGCAATGCATGTCCGATGAGAGGGGAATGCAGACACTTTGCAAGTGCCTTTGCAAGTGCAAGACTTGCCCTGCCAGCACCAGAGGAGAGAATGGCGAACACATCTGGAAACAATGCAACCGAGCAGAAGCTATCACAAGATATAAATCAGACGACCTTGCTTCTCCACGACAATCCAATTGAAGGGGCACTTCAACAAATCAATAAAACCAATCACCCTATAGTTGAAATGCCACCAAGTCCAGATCCAGACGATAGTCAATTTTCACAAGTTGATATAGAGGACGCCTTCAAAAAGGATTCATCTGAAATTCCAGACATACAAGTAGACATGGCAAAGTTCGCTTTGAGCATACGAAAGTATGTGCAACAAAACATGGAACTTCAAGAAGGAGAAATGTCAAAGGCCTTGGTTGCTTTAAAATCAGATGTGGCACTCATTCCTACACCCAAGCTGAAGAACGTGAGCAAGTTGAGAACAGAACATTACGTTTATGAACTACCCGACTCACATCCTCTTCTGAAAGGGTGGCAAGCGCGCGAACCAGATGATCCAGGCAGATACCTTCTGGCTATATGGACCCCAGGGGAGACAGCAGATTCCATACAGCCACCAGAAAGTATGTGCAGCTCTCAGGAAAGTGGACAGCTTTGCGAAGAAAATGAATGTTGTGCATGCAACAGTTTCCGTGAAGCAAATTCAGAGATAGTTCGAGGAACTATCCTGATACCATGTCGAACAGCTATGAGAGGGAACTTTCCACTAAATGGGACCTACTTTCAAGTCAATGAGGTTTTTGCTGATAATGACTCAAGTATAAACCCAATTAGTGTTCCCCGTAGTTGGATCTGGAACCTCGGTAGGAGAACAGTATACTTTGGAACCTCCGTGTCATCGATATTTAAAGGCTTATCAACACAAGACATCCAACAATGCTTTTGGAGAGGATATGTATGCGTGCGAGGATTTGACAGGGAAACGAGAGCGCCTCGGCCACTTTTGGCTAGATTGCACTTCACAGCTAGCAAGACGCCTAAGACGCCGAAGACGCCTAAGACGCCGAAGACGCCTAAGACGCCTAAGACGCCGAAGACGCCGAAGACGCCTAAGAAAAAGGGTAACACCGAAAAGATGTCGAAACCAGCAAATGATTTAAACAAAATTAAAAATCAGCCAGAATTGTTTTCCAGCATTCAAGAGACCACTGAAGCGTCGAGACAATAA 4293 0.4328 MCYNPQGKINGPTTEVAAVHAAQKDKSRDFDLNKTPQPKQPKRRKHRPKVVKEGQPKRTIKKAAAKTVQSKGNQADKRKARKGLNTTPPQTEVTGEWTSGPKSTVKTCHRSLSFGSKEQAIDDPGRRENMLFANASSSRNRAADHNGLQECPNNSIGRDGWSTGCGLQAAGSKRKQPGIEQADNTSINLLGAQYNNLLGAQYNDMKAYCLNYGVQFPNVQKKRRSVKGRISEAPSKSSVTATNDVQLATFLQDARSHSYMSSPKCWASGSDYTAAGVPLLITATERAIKDKHQPLEYTLSLGQKRPTKRRSRASTRTDVGLAHTAKQTCSSHRRTFGDAEGPRTCIDALVADLGASITKKKRTGKRSPVNYASSCKNERQNTLACVDEGEEIEIVDENVDALADQFIFLNINREAPERELHEQHMLVPYKPKKRSIRPKVDIDEETNKVWALLLKDSNNSGIDGSDAEKAINWELERKVYRGRAENFIAKMHQIQGDRGFSMWKGSVVDSVVGVFLTQNVSDHLSSSAFMALAARFPLKSTSTRHEESTSSQKKSTDESDSKESVQRHNNEHSPVDSAMTEEGQESLCQGSVKKELHNIISSQLAGVTSQTSGDFPTDQNPEKIGPFSDSNSKIEELPSTAQFNIYYNRTSFRELLEMASSTMLHDVDGQRSKATESFTGRSDQSIELNHDNQIGNLEKPDVIPYTLETLPTKEYTLQVTPNSGALQVNGYDRLTAEVPSSDSLEDKDENNKKYNFPTESDSKGAVVNSQGILSQLHPLQEINHDHNLFHISEQTQEPKQKEREKDVGNPSYEKGKGEGKKKSALVKPKSKKENNFDWDSLRVQAQAQAGKREKTEKTMDSVDWDAVRRADVNEISNTIKERGMNNMLAERIQSFLNLLVDKHKGIDLEWLRDVPPDQAKEFLLSIKGLGLKSVECIRLLTLHHLAFPVDTNVGRIAVRLGWVPIQPLPESLQLHLLELYPVLDAVQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPAPEERMANTSGNNATEQKLSQDINQTTLLLHDNPIEGALQQINKTNHPIVEMPPSPDPDDSQFSQVDIEDAFKKDSSEIPDIQVDMAKFALSIRKYVQQNMELQEGEMSKALVALKSDVALIPTPKLKNVSKLRTEHYVYELPDSHPLLKGWQAREPDDPGRYLLAIWTPGETADSIQPPESMCSSQESGQLCEENECCACNSFREANSEIVRGTILIPCRTAMRGNFPLNGTYFQVNEVFADNDSSINPISVPRSWIWNLGRRTVYFGTSVSSIFKGLSTQDIQQCFWRGYVCVRGFDRETRAPRPLLARLHFTASKTPKTPKTPKTPKTPKTPKTPKTPKTPKKKGNTEKMSKPANDLNKIKNQPELFSSIQETTEASRQ* 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0509 1430 MobiDBLite consensus disorder prediction 540 589 - -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 793 832 - -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 571 587 - -
Vra3g0509 1430 SMART endo3end 841 1015 IPR003265 GO:0006284
Vra3g0509 1430 Pfam RRM in Demeter 1262 1362 IPR028925 -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 738 765 - -
Vra3g0509 1430 CDD ENDO3c 863 981 IPR003265 GO:0006284
Vra3g0509 1430 MobiDBLite consensus disorder prediction 1 106 - -
Vra3g0509 1430 Gene3D Hypothetical protein; domain 2 854 944 - -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 540 570 - -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 1357 1430 - -
Vra3g0509 1430 Gene3D - 945 1033 IPR023170 -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 21 38 - -
Vra3g0509 1430 Pfam Permuted single zf-CXXC unit 1228 1257 IPR028924 -
Vra3g0509 1430 SUPERFAMILY DNA-glycosylase 483 1038 IPR011257 GO:0003824|GO:0006281
Vra3g0509 1430 MobiDBLite consensus disorder prediction 605 633 - -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 84 106 - -
Vra3g0509 1430 MobiDBLite consensus disorder prediction 1402 1430 - -
Vra3g0509 1430 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 14 1375 IPR044811 GO:0019104|GO:0035514|GO:0080111
Vra3g0509 1430 MobiDBLite consensus disorder prediction 303 326 - -
Vra3g0509 1430 SMART ccc3 1016 1036 IPR003651 GO:0051539
Vra3g0509 1430 MobiDBLite consensus disorder prediction 739 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0509 Vra-Chr3 5715714 5722601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0509 - - vra:106756933 2724.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0509 3 5715714 5722601 Vra3g0509 3 5715714 5722601 ECH
Vra3g0509 3 5715714 5722601 Vra8g0783 8 15398648 15410907 PCT