Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0301 ATGAAACTTCTTTCAACACCATTATTCAAGATACCGTCTATTCTCACTTTCACACAAAGGGAAATTGAAGAAACTATGGCTCTCCACCTCCTTTTGTTCCTTGTTGCCATGTTTGTTCCTTTTGCTGATAGCACAGTGCCAGAGGACCCAATTAGCTTATTTCATGAGGCTTCTCCTAAAGACAAGAACTTCATCATGCAGAGTACAAATGTTTTCAACTTTAAGAGTTTTCGCAAATTGGCTCAAATTTCTTCTTCCCTTAAAATGGTTAACGTCAATGATTATGGAGCTCGAGGAGATGGTAAAAGTGATGACACTCTGGCATTCGAGAAAGCTTGGGAAGAAGCATGTTCATATGAGGGAGCAGTTTTTGTGGTGCCGCAGAAAAATTATCTACTCAAGCCAATCACATTTTCTGGCCCTTGCAAATCCAACATCGCAGTACAGATCTCTGGAACCCTTGTAGCATCAGATAATCCATCAGATTACAGTGAAGACCGCTCACACTGGCTTAGGTTCCACAGTGTTGAGAAACTATCAGTTAATGGTGGTGGAACCATCGATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAACGAACCCTAAGCTTCCTTGCACGAAGGCCCCTACGGCGTTGAATTTCTACCAGTGCAACAACTTAACAGTTGAGGATTTGACGATAAAGAATGGGCAACAGATGCTTGTGTCATTTGAAAGATCTCAGAATGTTATAGCTTCTGGTCTCACTGTGACAGCACCGGAGGACAGCCCAAACACTGATGGAGTTCACATTACAAGAACTCAAAACATCCAAATCTCGAACACAGTTATAGGAACTGGCGATGATTGTATATCAATAGAAAATGGATCCATGAATGTGCAAGCCACAAAAATAACCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGTCTGGGAATTCCAAGGATTTTGTTTCAGGAGTAATAGTAAACGGAGCTAAATTTTCTGGAACTACAAATGGAGTAAGAATTAAAACATGGCAGGGAGGTTCAGGAAGTGCAAGCAACATCAAGTTTCAGAACATTGAAATGGACAAAGTAGCGAACCCTATAATAATAGATCAAAATTACTGTGATCAAGCCACACCATGCGAAAAACAAGAATCTGCAGTTGAGATTAGGAATGTGTTATACAAAAACATAAAAGGCACAAGTGCTTCTGATGTGGGTGTGCAATTTGAGTGCAGCGAGACGTTTCCATGCAAAGGGATAGTGTTGCAGAACATAGAGCTTGAACTTGAAGATGGAGAAGGGGCCAAAGCTTCATGCAACAGTGTTGAATTGTCCTACAGAGGAGATGTTAACCCTCAATGCCCATAG 1371 0.4165 MKLLSTPLFKIPSILTFTQREIEETMALHLLLFLVAMFVPFADSTVPEDPISLFHEASPKDKNFIMQSTNVFNFKSFRKLAQISSSLKMVNVNDYGARGDGKSDDTLAFEKAWEEACSYEGAVFVVPQKNYLLKPITFSGPCKSNIAVQISGTLVASDNPSDYSEDRSHWLRFHSVEKLSVNGGGTIDGNGNIWWQNSCKTNPKLPCTKAPTALNFYQCNNLTVEDLTIKNGQQMLVSFERSQNVIASGLTVTAPEDSPNTDGVHITRTQNIQISNTVIGTGDDCISIENGSMNVQATKITCGPGHGISIGSLGSGNSKDFVSGVIVNGAKFSGTTNGVRIKTWQGGSGSASNIKFQNIEMDKVANPIIIDQNYCDQATPCEKQESAVEIRNVLYKNIKGTSASDVGVQFECSETFPCKGIVLQNIELELEDGEGAKASCNSVELSYRGDVNPQCP* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0301 456 Pfam Glycosyl hydrolases family 28 123 444 IPR000743 GO:0004650|GO:0005975
Vra8g0301 456 ProSitePatterns Polygalacturonase active site. 299 312 IPR000743 GO:0004650|GO:0005975
Vra8g0301 456 SUPERFAMILY Pectin lyase-like 85 455 IPR011050 -
Vra8g0301 456 Gene3D - 78 452 IPR012334 -
Vra8g0301 456 SMART pbh1 351 372 IPR006626 -
Vra8g0301 456 SMART pbh1 322 343 IPR006626 -
Vra8g0301 456 SMART pbh1 269 290 IPR006626 -
Vra8g0301 456 SMART pbh1 219 268 IPR006626 -
Vra8g0301 456 PANTHER - 52 455 - -
Vra8g0301 456 PANTHER ENDO POLYGALACTURONASE 52 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0301 Vra-Chr8 3849759 3853276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0301 29 455 Glycoside Hydrolase AT3G57510 52.403 1.07e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0301 K01184 - gmx:100816917 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0301 8 3849759 3853276 Vra8g0301 8 3849759 3853276 ECH
Vra8g0301 8 3849759 3853276 Vra3g0261 3 2983398 2987668 PCT