Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0261 ATGGCCCTCCTCAAACACCTCCTCTTCTCCTTCACCATTTTCATCATTTCTTTTGTTTTTTGTTATGGCAGCTTGCAAGAGGACCCACTCACCAATATATATGTTCATCATTCACCTTCCGTTGATGATGGTGGGACATTATTCAAGAACTTCAACAAGCAAATCGAAAATGTTTTGAGCTTAAACAGGTTTGAGAAGCCTAGCTCCCTTAAAATGGTTAATGTCAATGATTATGGAGCTAAGAGGAATGGTGATGATGACTCAGAGGCTTTCAAAAAGGCTTGGGATGAGGTATGTACTTCTGGTGAAGCAATTCTTGTGGTGCCTAAGGATAATTATCTTCTCAAACCAATAAGATTCTCCGGCCCTTGCAAACCTAACATTGAAGTCCAGATTTCTGGAACACTTGAAGCAGCAGACGACCCATCAGATTACGAGGAAGACAGCACACACTGGCTTGTGTTTGACAATATTAAGAACCTGTATGTTTATGGGGGTGGAACCCTCGATGGAAACGGCAAAATATGGTGGGAAAACTCATGCAAAAAGAACAAAAAGCGATCTTGCAAGGATGCTCCAACAGCTCTGACTTTCGAAAGTTGTGAGGACTTGACAGTGGAGAACTTGAACATAGAAAATGCTCAACAAATCCACGTTTCATTCCAAGACTCCGAGAATGTTAAGGTTTCTGGCCTTAACGTGATTGCACCAGAGGATAGTCCCAACACCGATGGGATTCATGTCACCAAAACAAAAAACATCCAAATCTCAGATTCTGTCATAGGAACTGGTGATGATTGTATATCTATTGTACATGGATCTAAAAATGTAGAAGCTACAAACATTACATGTGGACCGGGACATGGTATCAGTATCGGAAGCTTAGGTGCAGGAAAATCCAAGGACGTTGTTTCAGGAATAAAAGTGAACGGAGCCAAGCTTTTTGGAACCAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATCAAGTTTCAGAACATTGAGATGACCAACGTGACCAACCCCATAATAATAAATCAGAATTACTGTGACAAGAAAAAAAGGCCATGCCAAAAAGCGGGCTCGGAGAAATCCGCTGTAGAAATCAAGAATGTGGTGTACGAGAACATAAGTGGTACAAGTGCTTCTGATGTAGCTGTGAAGTTTGACTGCAGTAAGAAATTTCCGTGCCAGAAGATAAAATTGCAGAACATAGACCTTGCATGTGAAGGAGGAGATGATGCCGAGGCTCAGTGTAACAATGTCGATAAGCCATCTTACATAGGACACGTTAAGCCTCGTTGCAGTAAAGAATAA 1338 0.4163 MALLKHLLFSFTIFIISFVFCYGSLQEDPLTNIYVHHSPSVDDGGTLFKNFNKQIENVLSLNRFEKPSSLKMVNVNDYGAKRNGDDDSEAFKKAWDEVCTSGEAILVVPKDNYLLKPIRFSGPCKPNIEVQISGTLEAADDPSDYEEDSTHWLVFDNIKNLYVYGGGTLDGNGKIWWENSCKKNKKRSCKDAPTALTFESCEDLTVENLNIENAQQIHVSFQDSENVKVSGLNVIAPEDSPNTDGIHVTKTKNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKDVVSGIKVNGAKLFGTKNGVRIKTWQGGSGSASDIKFQNIEMTNVTNPIIINQNYCDKKKRPCQKAGSEKSAVEIKNVVYENISGTSASDVAVKFDCSKKFPCQKIKLQNIDLACEGGDDAEAQCNNVDKPSYIGHVKPRCSKE* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0261 445 SUPERFAMILY Pectin lyase-like 70 442 IPR011050 -
Vra3g0261 445 Gene3D - 56 442 IPR012334 -
Vra3g0261 445 Pfam Glycosyl hydrolases family 28 105 431 IPR000743 GO:0004650|GO:0005975
Vra3g0261 445 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Vra3g0261 445 SMART pbh1 224 250 IPR006626 -
Vra3g0261 445 SMART pbh1 201 221 IPR006626 -
Vra3g0261 445 SMART pbh1 304 325 IPR006626 -
Vra3g0261 445 SMART pbh1 333 354 IPR006626 -
Vra3g0261 445 SMART pbh1 251 272 IPR006626 -
Vra3g0261 445 PANTHER - 7 443 - -
Vra3g0261 445 PANTHER ENDO POLYGALACTURONASE 7 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0261 Vra-Chr3 2983398 2987668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0261 11 443 Glycoside Hydrolase AT3G07970 49.315 1.87e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0261 K01184 - gmx:100797601 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0261 3 2983398 2987668 Vra3g0261 3 2983398 2987668 ECH
Vra8g0301 8 3849759 3853276 Vra3g0261 3 2983398 2987668 PCT