Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0300 ATGACGGTCACTCCTATGATCTCTATCAATGATGGGAACCTGGTGGTTCATGGCCAAATTATACTGAGTGGAGTGCCAGACAACATTGTCCTAACTCCAGGAACTGGAAAGGGCCTTGTGACAGGTGCATTTATTGGTGCCACTGCTTCCAACAGCAAAAGTCTGCATGTCTTTCCCATGGGTGTCTTAGAGGATCTTCGATTCTTGAGTTGTTTCCGGTTTAAGTTATGGTGGATGACTCACAGAGTGGGAACCTGCGGGAGGGATGTCCCATTGGAGACTCAGTTCATGCTTATAGAGAGCAAAGACAGTAAAGATTATCAAGAGAATTCTCCAACAGTTTACACTGTTCTGCTTCCTCTCCTGGAAGGCCAGTTCCGTGCTGTTCTACAAGGCAATGATAAAAACGAGATAGAGATTTGCCTTGAGAGTGGAGATCCTGCTGTTCAGACCAATCAAGGCCTTCACTTGGTCTACATGAATGCTGGCACCAACCCCTTTGAAGTCATCAACCAAGCTGTCAAGGCTGTAGAAAAACATATGCAAACTTTCCGTCACCGTGAGAGGAAAAAATTGCCATCTTTTCTTGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAAGGTGTTGAGGAAGGCCTCAAAAGCCTATCAGAGGGAGGTACAAGTCCAAGGTTCCTCATCATTGATGATGGTTGGCAACAGATTGAAAGTAAACCAAAAAGTGATGATGATTGTCTTGTACAAGAAGGAGCACAGTTTGCTACCAGGTTAACTGGTATTAAAGAAAATACTAAATTTCAAAAGAATGGACAGAGCAACGACACAATTTCTGGTTTGAAGCATGTTGTAGATGAAGCAAAGCGATGTCACAACGTGAAATATGTTTATGTTTGGCATGCTCTGGCTGGTTATTGGGGAGGAGTAAAGCCTGCAGCAAGTGGCATGGAGCATTACGACACTTCCTTGGCATATCCAGTACAGTCTCCTGGTGTGCTAGGAAACCAACCAGACATCGTCATAGACAGCTTGTCTGTTCATGGCTTGGGACTGGTGCACCCGAAGAAGGTTTTTGATTTCTACAATGAGCTTCATGCTTACTTAGCATCATGCGGAGTAGATGGAGTGAAGGTTGATGTGCAAAACATTATAGAGACCCTAGGTAGTGGACACGGTGGTAGGGTCACACTCACGCGCAGCTATATTCAGGCACTTGAGGCCTCTGTTGCTCAGCATTTTCGTGACAATGGATGCATTGCCTGTATGTGCCATAACACTGATGGCCTTTATAGTTCAAAGCAGACTGCTGTTGTGAGAGCATCTGATGACTTTTATCCCGGTGATCCTGCTTCCCACACTATTCACATTTCATCTGTTGCATATAACACACTTTTTCTGGGAGAGTTTATGCAAGCAGACTGGGACATGTTTCATAGTTTACATCCAGCAGCAGAGTACCATGCTGCAGCCCGTGCAGTCAGTGGAGGTCCAATTTATGTTAGTGATAAGCCAGGAAGGCACAATTTTAATCTTCTCAAGAGACTGGTTCTGTATGATGGTTCAGTTCTCCGTGCTCAGTTACCAGGCAGGCCTACCGTTGACACTCTCTTCGTTGATCCAGCAAGAGATGGAACCAGCTTGCTCAAGATATGGAACTTGAACAAATGCTCTGGAGTGGTTGGTGTGTTTAATTGCCAAGGTGCTGGGTGGTGCAAGATACAAAAGAAAACCCGAATTCATTGTCCATCACCTGGGACTCTCACTTGCTCAGTTTGTGCCTCTGATGTTGACCTCATTGCTCAAGTAGCCGGTGCTGATTGGAATGGTGACACTGTTGTTTATGCCTACAGATCAGGTGAGGTGATTCGGCTGCCAAAAGGTGCTTCGATTCCTGTGACACTGAAAGTTCTGGAGTATGAACTTTTCCATTTTTGTCCAATCAAGGAAATTGGGCCAAGTATTTCATTTGCACCGATAGGGTTATTGGATATGTTAAACGTTGGAGGTGCTGTGGAACATTTTGACGTTGATAAAGAATGTGCAGGAAAAGCAACTTTTATTGTGAAAGTGAGGGGAAATGGCAGATTTGGAGTTTATTCTTCTGAGTGTCCTGTGAAGTGTGTGGTAGCTGGCAATCAAACGGATTTCAACTATGACTCAGAGAGTGGATTGACAACCTTTTACATCCCTGTGCCTGAAAGGGAGATGTACTTATGCCAGATACAGATCCATTTTTGA 2256 0.4468 MTVTPMISINDGNLVVHGQIILSGVPDNIVLTPGTGKGLVTGAFIGATASNSKSLHVFPMGVLEDLRFLSCFRFKLWWMTHRVGTCGRDVPLETQFMLIESKDSKDYQENSPTVYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDPAVQTNQGLHLVYMNAGTNPFEVINQAVKAVEKHMQTFRHRERKKLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKSLSEGGTSPRFLIIDDGWQQIESKPKSDDDCLVQEGAQFATRLTGIKENTKFQKNGQSNDTISGLKHVVDEAKRCHNVKYVYVWHALAGYWGGVKPAASGMEHYDTSLAYPVQSPGVLGNQPDIVIDSLSVHGLGLVHPKKVFDFYNELHAYLASCGVDGVKVDVQNIIETLGSGHGGRVTLTRSYIQALEASVAQHFRDNGCIACMCHNTDGLYSSKQTAVVRASDDFYPGDPASHTIHISSVAYNTLFLGEFMQADWDMFHSLHPAAEYHAAARAVSGGPIYVSDKPGRHNFNLLKRLVLYDGSVLRAQLPGRPTVDTLFVDPARDGTSLLKIWNLNKCSGVVGVFNCQGAGWCKIQKKTRIHCPSPGTLTCSVCASDVDLIAQVAGADWNGDTVVYAYRSGEVIRLPKGASIPVTLKVLEYELFHFCPIKEIGPSISFAPIGLLDMLNVGGAVEHFDVDKECAGKATFIVKVRGNGRFGVYSSECPVKCVVAGNQTDFNYDSESGLTTFYIPVPEREMYLCQIQIHF* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0300 751 Gene3D Aldolase class I 198 520 IPR013785 -
Vra8g0300 751 Pfam Raffinose synthase or seed imbibition protein Sip1 7 734 IPR008811 -
Vra8g0300 751 SUPERFAMILY (Trans)glycosidases 195 521 IPR017853 -
Vra8g0300 751 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 1 750 - -
Vra8g0300 751 PANTHER - 1 750 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0300 Vra-Chr8 3833722 3839276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0300 1 550 Glycoside Hydrolase AT3G57520 79.129 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0300 K06617 - gmx:100807861 1278.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0300 8 3833722 3839276 Vra8g0300 8 3833722 3839276 ECH
Vra3g0260 3 2966352 2971683 Vra8g0300 8 3833722 3839276 PCT