Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0260 ATGACGGTGCTAAAGACAACACCAACGCAGTTCCCTACGTGGATTCCTCCATTCCGTGAACCACGTCGCTGTCTATCTAACATGTGCTTAACCTTTAGCATCCATCACCATCGTCATAAGCCCCTAGTTGTGAAGTGTTCGAAAATGACTGTCACTCCTAAGATCTCCGTCAACGATAAGAAATTGGTTGTTCATGGCAAGACCATATTAACCGGAGTACCGGACAACATTGTGCTCACTCCAGGATCTGGAGGTGGCCTAGTGACTGGTGCTTTTGTTGGTGCTACTGCTTCCCACAGCAAAAGTCTCCATGTGTTTCCAATGGGTGTCTTGGAGGAGCTCCGGTTCATGTGTTGCTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATGTTCCACTGGAGACACAGTTCATGCTGATTGAGAGCAAAGAGAGTGAAGTGGATGGAGAGAATTCTCCAACCATCTACACTGTCTTTCTTCCTCTTCTCGAAGGTCCATTCCGAGCTGTTCTTCAAGGCAACGACAAGAACGAGATAGAGATTTGCCTCGAGAGTGGGGATAACGCGGTTGAGACTGATCAAGGCCTTCACCTAGTTTACATGCATGCTGGGACCAACCCCTTTGAAGTCATCAATCAAGCAGTGAAGGCTGTGGAAAAACACATGCAAACTTTTCTTCACCGTGAGAAGAAAAAGTTACCCTCTTTTCTTGACTGGTTTGGTTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTAGAGGAAGGCCTGGAAAGAACACCGAAATTTGTTCAATATGATCACAGTCTATCTGCGGGAGCTACACCACCACGGTTCCTAATCATAGATGATGGCTGGCAACAGATTGAAAGTAAACAAAAGGATGTTGACTGTGTTGTACAAGAAGGGGCACAGTTTGCTACTAGGCTGACTGGTATTAGAGAGAATACTAAATTTCAGAAGAAAACACACAACAGTGAGCAAACATCAGGTCTGAAGCATTTAGTAGAAGGAGTAAAGCAGCATCACAACGTGAAAAATGTTTATGTATGGCATGCATTAGCTGGTTATTGGGGTGGAGTGAAACCAGCAGCAACTGGCATGGAGCATTATGACACTGCCTTGGCATATCCAGTGCAGTCACCAGGTGTGCTTGGAAACCAACCAGACATTGTCATGGACAGCTTGGCCGTACATGGCCTAGGCCTAGTGCACCCAAAGAAGGTTTTCAATTTCTACAATGAGCTCCATGCTTACTTGGCTTCTTGTGGAGTGGATGGAGTGAAGGTTGATGTGCAGAACATTATTGAGACCCTTGGTGCTGGACATGGTGGAAGAGTCTCTCTTACACGAAGCTATCATCACGCTCTTGAGGCTTCCATTGCTCGTAACTTCACTGAGAATGGATGCATTGCTTGCATGTGTCACAACACTGATGGCCTTTACAGTTCCAAGCAGACTGCTGTTGTGAGAGCCTCTGATGATTTCTACCCTCGTGATCCTGCTTCCCACACCATCCATATTTCTTCTGTTGCATACAACTCACTTTTCCTTGGAGAATTCATGCAACCAGATTGGGACATGTTTCATAGTTTACACCCTGCAGCAGAATATCATGCTGCGGCTCGTGCAATTGGTGGATGTCCAATTTATGTGAGTGACAAGCCAGGCTACCACAATTTTGATCTTCTTAAGAAACTGGTTCTTCCTGATGGTTCGGTTCTCCGAGCACAATTACCAGGGAGGCCAACTCGTGATTCTCTGTTTGTTGATCCAGCCAGAGATGGGACTAGCTTGCTCAAAATCTGGAACATGAACAAATGTTCTGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCTGGGTGGTGCAAGATAGAGAAGAAAACTCGCATCCATGATACATCTCCCGGTACACTAACTGGCTCTGTCTGTGCCTCTGATGTTGACCTTATCACCCAAGTAGCAGGTCCTGAATGGCTTGGAGAGACAATTGTTTATGCTTATAGATCAGGTGAGGTGATTCGGCTACCAAAGGGGGTTTCAGTTCCGGTGACACTGAAAGTTCTTGAGTTTGAACTTTTTCATTTCTGTCCAATCCATGAAATAGCACCAGGTATTTCATTTGCAGCGATAGGGCTACTTGATATGTTCAACACTGGAGGAGCTGTGGAGCTGGTTGAAATTCACAGAGCCTCTAACAACAAACCAGAACTGTTTGATGGTGAGGTGTTATCAGAATTAACCTGTTCTCAGAGTCCTAACCGAGCAGCAGCAGCAACTGTTTCTCTTAGAGTCAGGGGAAGAGGCAGGTTTGGAGTTTACTCCTCTCAACGCCCAGTGAAATGTGTAGTAGATGGCTCTGAAACAGACTTCAACTATGAGTCAGAGAGTGGGTTGGCAACCTTCTCCATCCCAGTTCCTCAAGAGGAGATGTATAGATGGGCAATAGAGATCAAAGTTTGA 2496 0.4591 MTVLKTTPTQFPTWIPPFREPRRCLSNMCLTFSIHHHRHKPLVVKCSKMTVTPKISVNDKKLVVHGKTILTGVPDNIVLTPGSGGGLVTGAFVGATASHSKSLHVFPMGVLEELRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEVDGENSPTIYTVFLPLLEGPFRAVLQGNDKNEIEICLESGDNAVETDQGLHLVYMHAGTNPFEVINQAVKAVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVEEGLERTPKFVQYDHSLSAGATPPRFLIIDDGWQQIESKQKDVDCVVQEGAQFATRLTGIRENTKFQKKTHNSEQTSGLKHLVEGVKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIARNFTENGCIACMCHNTDGLYSSKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGYHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLTGSVCASDVDLITQVAGPEWLGETIVYAYRSGEVIRLPKGVSVPVTLKVLEFELFHFCPIHEIAPGISFAAIGLLDMFNTGGAVELVEIHRASNNKPELFDGEVLSELTCSQSPNRAAAATVSLRVRGRGRFGVYSSQRPVKCVVDGSETDFNYESESGLATFSIPVPQEEMYRWAIEIKV* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0260 831 SUPERFAMILY (Trans)glycosidases 243 583 IPR017853 -
Vra3g0260 831 Gene3D Aldolase class I 245 576 IPR013785 -
Vra3g0260 831 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 49 831 - -
Vra3g0260 831 Pfam Raffinose synthase or seed imbibition protein Sip1 55 814 IPR008811 -
Vra3g0260 831 PANTHER - 49 831 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0260 Vra-Chr3 2966352 2971683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0260 49 614 Glycoside Hydrolase AT3G57520 80.600 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0260 K06617 - gmx:100807861 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0260 3 2966352 2971683 Vra3g0260 3 2966352 2971683 ECH
Vra3g0260 3 2966352 2971683 Vra8g0300 8 3833722 3839276 PCT