Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0218 ATGGCGATGGCTTCGAAACGAAGCGCGAAGTCCAAGGGATTACGATCGAGCGGCTCCAGAGCTGCGAATTCGCCGACGTCTTCAACGACGTCGTCTTCAAAACAGTTTCTAGAAACTTCTGTGGATGGTCTGAGCTCGCCGGCGTCTTCTTCCGCTCGGAGCAAGACGCCGTATTCGTTTTCCGAGAGCGTGCCTTCGGACGCCAAGGAGAATGTGACCGTTACGGTGCGGTTTCGTCCTCTGAATCCCAGGGAAATTCGTCATGGAGAGGAGATAGCGTGGTATGCTGATGGAGAAACCGTGGTCCGGAACGAGTATAACCCGTCCCTAGCGTATGCTTACGATCGTGTCTTTGGTCCCACAACTACAACTAGGCAGGTTTACGATGTTGCTGCTCAACATATTATTAGTGGTGCTATGGAGGGCATCAATGGTACAATATTTGCATATGGTGTAACAAGTAGTGGGAAGACTCATACAATGCATGGTGATCAAAGATCTCCGGGAATTATACCTCTTGCTGTGAAGGATGCTTTTAGCATTATCCAAGAGACTCCAAACAGAGAGTTTCTTCTTCGAGTTTCATATCTGGAGATCTACAATGAGGTGGTTAATGATTTATTAAATCCAGCTGGACAGAACTTAAGAATCAGAGAGGATGCTCAGGGAACCTTCGTTGAGGGAATAAAGGAAGAGGTTGTACTCTCCCCTGCTCATGCACTATCCCTTATAGCAGCCGGAGAAGAGCACAGACATGTTGGGTCCACAAACTTCAACCTACTCAGCAGCAGGAGCCATACAATATTTTCCCTGACTGTAGAGAGTAGTCCATGTGGTGAAAATAGTGAAGGACAAGCAGTAGCACTGTCTCAATTGAACCTCATCGATCTGGCAGGTTCTGAGAGCTCAAGGGCTGAAACAACTGGCATGAGAAGGAGAGAAGGATCTTACATCAATAAAAGTCTTCTAACTCTCGGAACTGTTATTTCAAAATTGACTGAAGGCAGAGCTAGTCATATACCTTACAGGGACTCCAAATTGACTAGACTACTTCAGTCTTCTCTCAGTGGTCATGGACGTATATCTCTCATTTGCACGGTAACACCTTCATCAAGTAATGCTGAAGAGACACATAATACTTTGAAGTTTGCTCACCGGGCAAAGCACGTTGAAATACAAGCAGCTCAAAACACGATAATTGATGAAAAGTCACTTATCAAGAAATACCAGTATGAAATTCAGCGCTTAAAGGAAGAATTGGAGCAAATGAAGCGGGGTGTTGTCTCTCTTCAACCGAAAGAAACTGATGAAGTTGACTTTGTGCTCCTAAAACAAAAGCTAGAAGATGGTCAAGTCAAGTTGCAATCAAGATTGGAGGAAGAAGAAGATGCTAAAGCTGCTTTATTAGGAAGAATTCAACGTTTGACTAAGTTAATTTTGGTCTCCACTAAACCATCACATTCAACTAGATTTTCTAACCGTCCTGGTCCTCGTAGAAGACATTCTTTTGGGGAAGAAGAGTTGGCATACCTTCCATACAAAAGAAGGGATTTAATCTCAGACGACGAGAACACTGATCTGCATGTTAATTTAGAGGGGAATGTGGAAACAGCTGATGATTCTTATAAGGAGGAGAAAAAGACAAAGAAACATGGGTTACTAAATTGGTTGAAGATGCGGAAACGAGATACTGGGTTAAGTGCCTTTTCAGGCACCAGTGATAAATCATGTGGAACAAAGTCTGTTAGCACACCTTCTACTCCTCTTGCAGAAAGTGGTAATCGTGCAGAGTCCAGACATTCCCATTCTCTACCTGCACAAAGCTCTCCATCGGCAGATTTCGTATCATCAAGAGAGGACAAAGAAATTCATGAGGATAGAGTATTGGGACAAGAGACACCTTTGATAAGCGTTAAATCAATTGATGAGATTGATCTATTGAGGGAGCAACAAAAGATTCTGTCAGAAGAAGTAGCTCTTCATTCAAGTACTTTGAAGAGATTGTCTCAGGAAGCTGCAAGAAACCCTCCAATGGATCAGATTCATGTGGAGATGGAAAGGTTAAAAGATGAAATTAGGGCTAAGAAGGAACAAATAAATTTTCTGCAAAAGCAAATTGCTGATTCTATCATTGCCTCAGATAAGTTGGATGAATCAAAGAATCTCACCGAGTTAATGACACAATTAAATGAAAAATCCTTTGAACTGGAGGTCAAAATAGCAGATAACCATATAATCCAAGAACAGCTTAATCAGAAGATCCGTGAATGTGAAAGCCTTCAAGAAACAGTTGGCTCTCTGAAACAGCAGCTTGCAGATGCACTGGAGTTGAGAAACTTAAGGCCTATATCCAATCATTCTCAACATTGCTCTGTAACCAAAGGCTACCATGATGAACCTTACCTTGAAAAGGAAACTGCCACGATAAACAATTCTAATGAAAAAATTCTTTTGCAACAGCAGGCAAGCGAGATAGAAGAGCTGAAGCAGAAGTTGGCGGAGATAACAGAATCAAAAGAACAGCTAGAACTTCGGAATCATAAACTGGCAGAAGAGAGTTCATATGCTAAAGACCTAGCTTCTGCTGCTGCCGTTGAGCTTAAGGCGTTGTCAGAAGAAGTTGCGAAACTAATGAACCAGAATGAGAGATTATTGGCTGAGCAGGCTGTATTGAAGAACTCTCCTGCCCAACGTAGAAATAGTGGAACTGGAACAGTCCGAAGTGGAAAAAGAGAAAGTCATGTTAGAAGAAATGATCAGGGTGGATTAAACTCTGATATAAAGAGAGAACTGGCCTTGAGTAAAGAAAGGGAACTTTCATACGAAGCTGCTCTTTTAGACAGGGATCACAAAGAAGCCGAGCTTCAAAGGACGATTGAAGAATCAAAGCAAAGAGAAGCATACCTGGAAAATGAACTTGCCAACATGTGGGTTCTTGTAGCTAAGCTAAAAAAGTCACAGGGAGCTGAAACTGATGTTTGA 2982 0.4242 MAMASKRSAKSKGLRSSGSRAANSPTSSTTSSSKQFLETSVDGLSSPASSSARSKTPYSFSESVPSDAKENVTVTVRFRPLNPREIRHGEEIAWYADGETVVRNEYNPSLAYAYDRVFGPTTTTRQVYDVAAQHIISGAMEGINGTIFAYGVTSSGKTHTMHGDQRSPGIIPLAVKDAFSIIQETPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDAQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFSLTVESSPCGENSEGQAVALSQLNLIDLAGSESSRAETTGMRRREGSYINKSLLTLGTVISKLTEGRASHIPYRDSKLTRLLQSSLSGHGRISLICTVTPSSSNAEETHNTLKFAHRAKHVEIQAAQNTIIDEKSLIKKYQYEIQRLKEELEQMKRGVVSLQPKETDEVDFVLLKQKLEDGQVKLQSRLEEEEDAKAALLGRIQRLTKLILVSTKPSHSTRFSNRPGPRRRHSFGEEELAYLPYKRRDLISDDENTDLHVNLEGNVETADDSYKEEKKTKKHGLLNWLKMRKRDTGLSAFSGTSDKSCGTKSVSTPSTPLAESGNRAESRHSHSLPAQSSPSADFVSSREDKEIHEDRVLGQETPLISVKSIDEIDLLREQQKILSEEVALHSSTLKRLSQEAARNPPMDQIHVEMERLKDEIRAKKEQINFLQKQIADSIIASDKLDESKNLTELMTQLNEKSFELEVKIADNHIIQEQLNQKIRECESLQETVGSLKQQLADALELRNLRPISNHSQHCSVTKGYHDEPYLEKETATINNSNEKILLQQQASEIEELKQKLAEITESKEQLELRNHKLAEESSYAKDLASAAAVELKALSEEVAKLMNQNERLLAEQAVLKNSPAQRRNSGTGTVRSGKRESHVRRNDQGGLNSDIKRELALSKERELSYEAALLDRDHKEAELQRTIEESKQREAYLENELANMWVLVAKLKKSQGAETDV* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0218 993 Coils Coil 860 894 - -
Vra8g0218 993 Coils Coil 811 852 - -
Vra8g0218 993 MobiDBLite consensus disorder prediction 909 923 - -
Vra8g0218 993 Coils Coil 743 777 - -
Vra8g0218 993 Pfam Kinesin motor domain 77 390 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g0218 993 Gene3D Kinesin motor domain 62 421 IPR036961 -
Vra8g0218 993 SMART kinesin_4 69 398 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g0218 993 ProSiteProfiles Kinesin motor domain profile. 71 390 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g0218 993 ProSitePatterns Kinesin motor domain signature. 290 301 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra8g0218 993 Coils Coil 444 478 - -
Vra8g0218 993 MobiDBLite consensus disorder prediction 893 908 - -
Vra8g0218 993 MobiDBLite consensus disorder prediction 567 614 - -
Vra8g0218 993 Coils Coil 678 705 - -
Vra8g0218 993 MobiDBLite consensus disorder prediction 893 923 - -
Vra8g0218 993 CDD KISc_CENP_E 71 390 - -
Vra8g0218 993 Coils Coil 952 972 - -
Vra8g0218 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 425 IPR027417 -
Vra8g0218 993 MobiDBLite consensus disorder prediction 567 628 - -
Vra8g0218 993 PANTHER KINESIN-LIKE PROTEIN KIN-7K, CHLOROPLASTIC ISOFORM X1 59 992 - -
Vra8g0218 993 MobiDBLite consensus disorder prediction 10 66 - -
Vra8g0218 993 PANTHER CENTROMERE PROTEIN E 59 992 - -
Vra8g0218 993 Coils Coil 399 426 - -
Vra8g0218 993 MobiDBLite consensus disorder prediction 1 66 - -
Vra8g0218 993 PRINTS Kinesin heavy chain signature 142 163 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g0218 993 PRINTS Kinesin heavy chain signature 256 273 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g0218 993 PRINTS Kinesin heavy chain signature 291 309 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g0218 993 PRINTS Kinesin heavy chain signature 340 361 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0218 Vra-Chr8 2593727 2619855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0218 65 719 Miscellaneous Gene Families AT5G06670 71.212 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0218 K11498 - gmx:100809643 1666.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0218 8 2593727 2619855 Vra8g0218 8 2593727 2619855 ECH
Vra3g0048 3 497878 514803 Vra8g0218 8 2593727 2619855 PCT