Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0048 ATGGCATCCAAACAAGGTGTGAAATCTAGAAGGTTTGGATTGAGTGGCTTAAAAGGTGCTAATTCCCCTTCTTCTTCAACTACGTCGTCTTCTAAACAGGTTCTGGATACATCCTTTGATGGCCAGAGCTCGCCGGCATCTTCCTCGGCTCGAAGTAAGCAGCGGCATTTTAATCCGGAGACTGCAGCTGCAACGCCTCCTTTGGAGCCACAGAGAGTGAAAGAAAATGTCACGGTGACGGTCCGATTTCGGCCTCTGAATCCAAGGGAAATTCGTCAAGGAGAGGAAATTGCTTGGTATGCAGATGGAGACACTATAGTGCGAAATGAGTATAACCCTTCCATAGCATATGCATACGATCGTGTCTTTGGTCCCACAACCACAACTCGTCAAGTCTATGATGTTGCTGCTCAACATGTCGTTAGTGGTGCTATGGAGGGCATCAACGGTACGGTGTTTGCATACGGGGTAACAAGCAGTGGAAAGACTCACACAATGCATGGTGATCAAAGATCTCCAGGAATTATACCCCTTGCCGTTAAGGATGCTTTTAGCATTATCCAAGAGACTCCAAACCGCGAGTTTCTCCTTCGAGTTTCATACTTGGAGATCTACAATGAGGTGGTTAATGACTTATTAAATCCAGCAGGACAGAACTTACGAATCAGAGAGGATACTCAGGGCACCTATGTTGAGGGAATAAAGGAAGAGGTTGTACTCTCCCCTGCTCATGCACTGTCTCTTATTGCAGCTGGAGAAGAGCACAGACATGTTGGGTCTACAAACTTTAACTTACTCAGCAGTAGGAGCCATACGATATTTACCCTGAGTATAGAGAGTAGTCCATGTGGTGAAAACAGTGAAGGAGAAGCAATAACACTTTCACAACTGAATCTCATCGATCTAGCAGGTTCGGAGAGCTCTAAAGCTGAAACTACTGGCATGAGAAGGAGAGAAGGGTCTTATATCAATAAAAGTCTTCTAACACTTGGAACTGTTATTTCAAAATTGACTGAAGATAAGGCTAGTCACATACCTTATAGGGATTCCAAATTGACTAGAGTACTTCAGTCTTCACTAAGTGGTCATGGACGTGTTTCTCTTGTTTGCACCGTAACTCCATCATCAAGTAGTACTGAAGAGACACATAACACATTGAAGTTTGCTCACCGGGCAAAGTACATTGAAATACGGGCATCGCAAAACAAGATAATTGATGAAAAGTCACTTATCAAGAAATACCAACAAGAGATTCAATGCTTAAAGGAAGAATTGGAACAATTAAAGAGAGGTATTGTCACAGTTCAACCTAAAGATACTGGGGATGATGATGACATTGAGCTCCTAAAACAGAAGTTAGAAGATGGTCAAGTTAAGTTGCAATCCAGATTGGAACAAGAAGAAGATGCTAAAGCTGCTTTGCTAGGCAGAATTCAACGGTTGACGAAGTTAATTTTGGTCTCCTCAAAAGCTCCACCATCTACAAGATTTCCTAACAGACCTGGTCCTCGTAGAAGACACTCTTTCGGGGAAGAGGAGCTGGCATACCTTCCATACAAAAGACGGGATTTAATCTTGGACGAGGAAAATGTTGATTTGTATGTTAATCTCGAAGGAAATGCTGCAATAGCTGATGATTCTCTAAAGGGCGAAAAAAAGATAAAGAAACATGGACTACTAAATTGGTTGAAGCTACGTAAACGAGATAGTGCCTTGACAGGCACAAGTGATAAATCTAGTGGAGCAAAATCAACTAGCACACCTTCTACACCTCAAGCAGAAAGCGGTAATCATTTGGAGTCTAGACTTTCTCATTCTCAACCTGCAGAAAGCTCTCCCTCTGCTGATCTTGCATCAGAGGCAAGAGAGGATAAATATATTCACGAGGATAGTTTAATGGGGCAAGACACTCCTTTGACAAGCATCAAATCTGTTGATCAGATTGATCTTCTGAGGGAGCAGCACAAGATTTTATCTGGAGAAGTGGCACTTCATTCAAGTGCTTTGAAGAGGCTGTCTGATGAAGCAACAAGAAATCCTCAGAATGGTCAGATTCATGTGGAGATGGAAAATTTGAAAGATGAAATTACAGCAAAGAGTGAACAAATAGATTTGCTGGAAAAACAAATTTCTAATTCTTTCATTGCTTCAGACAAGATTGAACAGTCAGGAGCTTTGCAGACTGTTGCTGAGCTGATGGCACAATTAAATGAAAAATCCTTTGAACTCGAGGTGAAAGCAGCAGATAATCGTATAATTCAAGAACAGCTTAATCAGAAGATTTGTGAATGTGAAAGCCAGCAAGAAACGATTGCCTCTCTGAAACAGCAACTTGCAAATGCGGAGTTGAGAAATTCCAGTCCTGTTGTCAGCCATTCACAAAATTTCTCAGTTACCAAAGACTATGGTGGTGAAATTCACCTTGACAAGGGGAATAAGATGATAAACAATTCTAATGAAGGGATTCATTTGCAAGTACAGACAAATGAGATAGAAGAGCTGAAGCAGAGAGTGGCACAACTAACAGAATTAAAGGAGCAGTTAGAATTCAGAAATCAGAAGTTGGCAGAAGAGAGTTCATATGCTAAAGGGTTAGCTTCAGCTGCTGCTGTTGAGCTTAAGGCACTGTCAGAAGAAGTTGCCAAACTCATGAACCAGAACGAGAGACTAGCTGCTGAGCTAGGTGCATCCAAGAATTCAACCACTGAACGTAGAGCTAGTGGCACAGTCCACAATGGGCGAAGAGAAAGCCATGTCAGAGTTAGACGAAATGATCAGGGTGGATCAAACACCAATATCAAGAGGGAATTAGCCCTGAGCAAAGAAAGGGAACTTTCATATGAAGCTGTACTTTTAGAAAAAGATCACAAAGAGGCCGAACTTCAAAGAAAGATTGAGGAGTCAAAGCAAAGAGAAGCATACCTGGAAAATGAGCTTGCGAACATGTGGGTCCTTGTAGCTAAGCTTAAAAAGTCACAAGGAGCTGAAACTGAAACTGATGTTTCAGGGTCTACTAGAGAGAGTGTGCAGATGAATGGTTTTGATGTTTGA 3051 0.4192 MASKQGVKSRRFGLSGLKGANSPSSSTTSSSKQVLDTSFDGQSSPASSSARSKQRHFNPETAAATPPLEPQRVKENVTVTVRFRPLNPREIRQGEEIAWYADGDTIVRNEYNPSIAYAYDRVFGPTTTTRQVYDVAAQHVVSGAMEGINGTVFAYGVTSSGKTHTMHGDQRSPGIIPLAVKDAFSIIQETPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRIREDTQGTYVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLSIESSPCGENSEGEAITLSQLNLIDLAGSESSKAETTGMRRREGSYINKSLLTLGTVISKLTEDKASHIPYRDSKLTRVLQSSLSGHGRVSLVCTVTPSSSSTEETHNTLKFAHRAKYIEIRASQNKIIDEKSLIKKYQQEIQCLKEELEQLKRGIVTVQPKDTGDDDDIELLKQKLEDGQVKLQSRLEQEEDAKAALLGRIQRLTKLILVSSKAPPSTRFPNRPGPRRRHSFGEEELAYLPYKRRDLILDEENVDLYVNLEGNAAIADDSLKGEKKIKKHGLLNWLKLRKRDSALTGTSDKSSGAKSTSTPSTPQAESGNHLESRLSHSQPAESSPSADLASEAREDKYIHEDSLMGQDTPLTSIKSVDQIDLLREQHKILSGEVALHSSALKRLSDEATRNPQNGQIHVEMENLKDEITAKSEQIDLLEKQISNSFIASDKIEQSGALQTVAELMAQLNEKSFELEVKAADNRIIQEQLNQKICECESQQETIASLKQQLANAELRNSSPVVSHSQNFSVTKDYGGEIHLDKGNKMINNSNEGIHLQVQTNEIEELKQRVAQLTELKEQLEFRNQKLAEESSYAKGLASAAAVELKALSEEVAKLMNQNERLAAELGASKNSTTERRASGTVHNGRRESHVRVRRNDQGGSNTNIKRELALSKERELSYEAVLLEKDHKEAELQRKIEESKQREAYLENELANMWVLVAKLKKSQGAETETDVSGSTRESVQMNGFDV* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0048 1016 PRINTS Kinesin heavy chain signature 147 168 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0048 1016 PRINTS Kinesin heavy chain signature 261 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0048 1016 PRINTS Kinesin heavy chain signature 296 314 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0048 1016 PRINTS Kinesin heavy chain signature 345 366 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0048 1016 MobiDBLite consensus disorder prediction 574 614 - -
Vra3g0048 1016 Coils Coil 397 431 - -
Vra3g0048 1016 Pfam Kinesin motor domain 82 395 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0048 1016 Coils Coil 689 709 - -
Vra3g0048 1016 PANTHER KINESIN-LIKE PROTEIN KIN-7K, CHLOROPLASTIC ISOFORM X1 53 1004 - -
Vra3g0048 1016 MobiDBLite consensus disorder prediction 993 1016 - -
Vra3g0048 1016 PANTHER CENTROMERE PROTEIN E 53 1004 - -
Vra3g0048 1016 MobiDBLite consensus disorder prediction 571 620 - -
Vra3g0048 1016 CDD KISc_CENP_E 76 395 - -
Vra3g0048 1016 Coils Coil 824 858 - -
Vra3g0048 1016 Coils Coil 450 484 - -
Vra3g0048 1016 MobiDBLite consensus disorder prediction 996 1016 - -
Vra3g0048 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 430 IPR027417 -
Vra3g0048 1016 Coils Coil 866 900 - -
Vra3g0048 1016 Gene3D Kinesin motor domain 68 426 IPR036961 -
Vra3g0048 1016 MobiDBLite consensus disorder prediction 1 73 - -
Vra3g0048 1016 MobiDBLite consensus disorder prediction 892 907 - -
Vra3g0048 1016 MobiDBLite consensus disorder prediction 892 917 - -
Vra3g0048 1016 Coils Coil 947 978 - -
Vra3g0048 1016 ProSitePatterns Kinesin motor domain signature. 295 306 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra3g0048 1016 SMART kinesin_4 74 403 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0048 1016 ProSiteProfiles Kinesin motor domain profile. 76 395 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0048 1016 MobiDBLite consensus disorder prediction 18 59 - -
Vra3g0048 1016 Coils Coil 757 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0048 Vra-Chr3 497878 514803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0048 1 728 Miscellaneous Gene Families AT5G06670 69.210 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0048 K11498 - gmx:100815027 1761.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0048 3 497878 514803 Vra3g0048 3 497878 514803 ECH
Vra3g0048 3 497878 514803 Vra8g0218 8 2593727 2619855 PCT