Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0212 ATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCTATTGTAGGTTGCGAACTCACACCCTACGTCCTCCTTCGCCGTCCTGATAAGACCATATCTACCGACGATGTTCCCGAAACTGCCCCTTTAGATGGTCATTTCCTCCGCTACAAATGGTATCGTGTACAGAGTGACAAAAAAGTTGCTGTCTGTAGCATACATCCATCAGAGCAAGCCACACTGCAATGCCTAGGTTGTGTTAAGGCCAAAATTCCTCTTTCTAAGAGCTACCATTGCACCACAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGATCGTGCTGCAAGTGCCCTTAATGAAAATGGAAATGAGGAGGAAGAGGTATTTGGGCGCTTTAATAGTACTGGGTCTGGGACAATCAATTCCAGCTTATCTGCTTCTGCTTCAAGTGCTAGCTTGACAAATGGGTCTGCAACAAATTTGTATCCAGCTGCTATTACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACTTATACCCCTACCGCTGATGATGTTGGTCATGTCCTTAAGTTTGAGTGTGTTGTAGTTGATGCAGAGACAAAAATGCCTTTGGGGCCTGTTAACACTATACTAACTTCACGTGTCATTCCTGCTCCTTCACCTATTCCACGCAAGCAGATACGTGTTGATGGAGTGGGGCATTTAGATGTTGATGCGAGAATGACAACTTCAGGAACTTTTACTGTTTTATCCTACAATATATTATCAGAAGCATATGCCTCAAGTGATCTATACAATTACTGCCCTTCGTGGGCACTTTCTTGGCCATATCGTCGGCAAAATTTGTTACGAGAAATTGTTGGTTACCGTGCAGACATTATTTGTCTTCAGGAGGTTCAAAGCGATCATTATGATGAATTTTTTTCTCCTGAACTGGACAAACATGGATATTATGGTCTTTACAAGAGAAAAACCAATGAGGTGTACAGTAGCAACACAAATACAATTGATGGTTGTGCAACATTTTTCCGCAGAGACAGATTTTCGCATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACAGAGGCTACAATTCCAACCACTCAGAAAAAAAGTGCCTTGAACAGACTGGTTAAGGATAATGTTGCACTAATTGTTGTTCTAGAAGCAAAAGTTAACAATCAACCTTTTGATAATCCTGGGAAAAGGCAGCTTCTTTGTGTGGCAAACACACATGTAAATGTCCCCCAAGATTTAAAGGATGTGAAACTCTGGCAGGTTCACACTCTCTTAAAAGGGTTGGAGAAAATAGCTGCAAGCGCAGACATTCCAATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAAGTAGACCCTTCACATCCTGATTTAGCAGTTGACCCACTTAACATTTTACGTCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTCAGTGCATACTCATCTTTTGCGAGAACAGTTAGCCTTGGATACGATCAGCATAAAAGGAGACTGGACGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATCGGCACTCTAGATTATATATTTTACACTGCGGATTCTTTAGTTGTGGAGTCATTATTGGAGTTACTAGACGAGGAGAGTTTGAGGAAGGACACTGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCTGAGTTCCGCTGCTGCAAGAATAAATCTAGGCGTTGA 1803 0.4248 MLSVVRVHLPSEIPIVGCELTPYVLLRRPDKTISTDDVPETAPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPLSKSYHCTTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGTINSSLSASASSASLTNGSATNLYPAAITQRSGETWFEVGRSKTYTPTADDVGHVLKFECVVVDAETKMPLGPVNTILTSRVIPAPSPIPRKQIRVDGVGHLDVDARMTTSGTFTVLSYNILSEAYASSDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYDEFFSPELDKHGYYGLYKRKTNEVYSSNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKSALNRLVKDNVALIVVLEAKVNNQPFDNPGKRQLLCVANTHVNVPQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVSLGYDQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKSRR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0212 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 36 597 - -
Vra8g0212 600 PANTHER CARBON CATABOLITE REPRESSOR-LIKE PROTEIN 36 597 - -
Vra8g0212 600 Pfam Endonuclease/Exonuclease/phosphatase family 253 584 IPR005135 GO:0003824
Vra8g0212 600 CDD Deadenylase_CCR4 252 593 - -
Vra8g0212 600 Gene3D Endonuclease/exonuclease/phosphatase 220 599 IPR036691 -
Vra8g0212 600 SUPERFAMILY DNase I-like 245 594 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0212 Vra-Chr8 2488649 2496554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0212 278 476 EF-hand Containing Proteins AT5G54130 25.121 1.69e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0212 K12603 - gmx:100819402 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0212 8 2488649 2496554 Vra8g0212 8 2488649 2496554 ECH
Vra3g0652 3 7046054 7052944 Vra8g0212 8 2488649 2496554 PCT