Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0652 ATGCTGAGCGTGCTGCGCGTGCACCTCCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTACGTGCTCCTACGCCGACCTGACAAGACCGTTACCACCGACGATGTCCCCGAAGCCGCCCCGTTAGATGGTCATTTCTTGCGCTACAAGTGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTATACATCCATCTGAGCAGGCCACACTGCAGTGCCTTGGTTGTCTAAAGGTTAAGGTACCTGTTGCCAAAAGTTACCACTGCACTCCAAAATGTTTTTCAGATGCTTGGCAGCATCATCGTGTCTTACATGATCGTGCTGCAAGTTCAGGTAATGAAAATGGAAATGAGGAAGAAGAGTTATTTGGACGATTTAATAATTCTGGATCTGGATCAATCACTACCACCTTATCTTCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCGCCTGTTTATCCAGCAGCCATTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACGTATACGCCAACAGCTGATGACATTGGTCATGTCCTTAAATTTGAGTGTGCTGTAGTTGATGCAGAGACTAAACTTACTGTAGGGCATGCTAGCACTCTACTAACATCCCGTGTCATTCCTGCCCCCTTGCCTAGCCCACGCAGAATGATACATGTTGAGGGGATGGGACATTTGGATGCTGATGCACGCTTAACATCAACAGGAACATTTACTGTTCTATCATACAACATATTGTCTGATTCATATGCCTCAAATGATCTATACAATTACTGCCCTTCATGGGCTCTTTCCTGGCCATATCGCAGGCAAAATTTGTTACGAGAAATAGTTGTTTACCGTGCTGATATTATTTGTCTTCAAGAGGTTCAAAGTGATCATTATGAAGAATTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGTCTTTACAAAAGGAAAACAAATGAGGTATATAGTGGCAACATTTATACAATTGATGGGTGTGCAACATTCTTCCGAAGGGACAGATTTTCACATGTGAAAAAATACGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGGATAATGTTGCATTAATAGTTGTTTTAGAAGCAAAAGCTAACCAGCCTGTGGACAATCCTGGGAAAAGACAGCTTCTTTGCGTGGCAAATACACATGTAAATGTTCATCATGATTTAAAGGACGTCAAACTTTGGCAGGTGCACACTCTTTTGAAAGGATTGGAGAAAATTGCTGCTAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAGTTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGAAAGGTAGACCCATCCCATCCTGATTTAGCTGTTGACCCACTTAATATATTACGTCCTCACAGCAAGTTGGTTCATCAGTTGCCACTGGTCAGTGCTTATTCATCCTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACAGAGACTAGACAATGTAACAAATGAACCTTTATTCACTAATGTAACTAGAGATTTTATTGGCTCTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACCGCACTTCCTTCTCCTGAGTGGTCCTCTGATCATATAGCTCTGTTAGCTGAGTTTCGCTGCTGCAAGAATAGATCTAGGCGATGA 1800 0.4261 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPEAAPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCLKVKVPVAKSYHCTPKCFSDAWQHHRVLHDRAASSGNENGNEEEELFGRFNNSGSGSITTTLSSSASSASLTNGSAPVYPAAITQRSGGETWFEVGRSKTYTPTADDIGHVLKFECAVVDAETKLTVGHASTLLTSRVIPAPLPSPRRMIHVEGMGHLDADARLTSTGTFTVLSYNILSDSYASNDLYNYCPSWALSWPYRRQNLLREIVVYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKRKTNEVYSGNIYTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKANQPVDNPGKRQLLCVANTHVNVHHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKQRLDNVTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0652 599 MobiDBLite consensus disorder prediction 113 132 - -
Vra3g0652 599 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 594 - -
Vra3g0652 599 Pfam Endonuclease/Exonuclease/phosphatase family 253 583 IPR005135 GO:0003824
Vra3g0652 599 SUPERFAMILY DNase I-like 245 593 IPR036691 -
Vra3g0652 599 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 594 - -
Vra3g0652 599 CDD Deadenylase_CCR4 252 592 - -
Vra3g0652 599 Gene3D Endonuclease/exonuclease/phosphatase 220 598 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0652 Vra-Chr3 7046054 7052944 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0652 K12603 - gmx:100775270 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0652 3 7046054 7052944 Vra8g0212 8 2488649 2496554 PCT