Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0201 ATGGAGTTACCTTCAAATAACTTAGATGTTGGGCCTAGGCAGATTGAACATGAGAAAGACGAAGGTCCCTCGTTGCATTGTGATTTTTGTGACATTGAAGTAGTTCACAAGCTGGCTCAAATGTTCATGCCAGCACTAGGCTGTGCCTGTGTTGATAACACAACAGGAGATCCCTTCAAGACCCCTGGTTTTGTGGCTGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAATTATTTGTTGCTGAGTCTATTATCTCTGAGGACGTTCCTGACGGTGAAGCTTTGGAACATCCTTTTGATATCATTTGTTTTTTTGTTGACGAGTTTGTTAATTCAAAGAGAAATTTGTTGAGTCAGTTTTCTGGGTGGTTGCTAAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAAGAGATGGAAAAAAATGGTTTTTGGCCACTGGATAGAAGAGAAACACTTGCCAAAGATTTGCTCAAGAACGTTGACTTCAAAAGCTCATTTCATTGTGGTATGAGTTTTAAATCTGGAGAAGATCTTGCCAACCATGTTGATGCTTGCAACTTCAGGTCTGTGGTATGTCAAAATGACGGGTGCAATGATAGATTTAGTGCTGGTCAATTGAAAGAGCATGATTCAACTTGTGATTTCAAGATAGTTCCATGTGAACAAAAGTGCACAGCTAACATCTTGCGACGTGACATGGATAGACACTGCATAACTGTTTGTCCACTGAAGCTTGTCGATTGCCCTTTCTCTGCCATAGGTTGTAGATCTACAATTGGGCAAAGTATGATTAGAAAACATTGTTCGGATGATGTTGAGTCTCACTTACTACTAATACTTAAAGGCATCCATCAACAAGCATCAGACAAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGACCTCATCGAAAAGCAAATTAGCAGAGGCTAAGGATGTGAGATCTTTTAAAAGTATTGTGAAGGACCTTGAAGTTAAGCTAGGGTCTCTGGAAGTGAGTGCCAAGGAGAAAACATGTGCAGAAGTTTCCAAAAATGAAGACAGTGAAGACAATAGAACTGGCGAAACAAAGGGTGTCAATAAAGAGGATAGTGAACACACGGAAAATGGAAAACAAGTGTAA 1146 0.3962 MELPSNNLDVGPRQIEHEKDEGPSLHCDFCDIEVVHKLAQMFMPALGCACVDNTTGDPFKTPGFVAVDLRKEMIEFVTQKSELFVAESIISEDVPDGEALEHPFDIICFFVDEFVNSKRNLLSQFSGWLLSDKREDKIDDFVQEMEKNGFWPLDRRETLAKDLLKNVDFKSSFHCGMSFKSGEDLANHVDACNFRSVVCQNDGCNDRFSAGQLKEHDSTCDFKIVPCEQKCTANILRRDMDRHCITVCPLKLVDCPFSAIGCRSTIGQSMIRKHCSDDVESHLLLILKGIHQQASDKDLQRRVEQIVQTSSKSKLAEAKDVRSFKSIVKDLEVKLGSLEVSAKEKTCAEVSKNEDSEDNRTGETKGVNKEDSEHTENGKQV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0201 381 MobiDBLite consensus disorder prediction 346 381 - -
Vra8g0201 381 MobiDBLite consensus disorder prediction 1 20 - -
Vra8g0201 381 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
Vra8g0201 381 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 356 - -
Vra8g0201 381 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 356 IPR043211 -
Vra8g0201 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 281 IPR013083 -
Vra8g0201 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 218 IPR013083 -
Vra8g0201 381 SUPERFAMILY TRAF domain-like 203 268 - -
Vra8g0201 381 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0201 Vra-Chr8 2385610 2390020 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0201 - - vra:106769987 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0201 8 2385610 2390020 Vra8g0201 8 2385610 2390020 ECH
Vra3g0645 3 6988100 6991301 Vra8g0201 8 2385610 2390020 PCT