Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0645 ATGGACATGCCTACCATTGATGTGGACCTTGGGCCGGAGAAGTTTGAAGAGGAAAAACAAGGAGGACCTTTGTTTCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCACAAATGTTCCTTCCAGGTCTAGCTAGTGCTTGTGTTGATAATACATCAGGAGATCTCTTTAAGACAGCCGGTTCAGTAGCTGTTGATATGAGGAAGGAGATGATAGAATATCTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATATTGGAAGGTGGTCCAGACGGTGAAGTATCAGACCATCCTTATGATATTATTTCTAATTTAGTTGATGATTTTGCAAGTTCAAAGAGAAATTTGTTTAGTCGGGTTTCTGGATGGCTACTAAGTGAAAAGAGAGAAGATAACATAGAAGATTTTGTTCAAGAGATGGAAGTAAATGGGTTTTGGACACTTGAGAGGAGGGAAAAAATTGCAGAAACTTTGTTAAAAAATGTTGACTTTGAGAACTCATATCATTGCAACATGAGTTTTAATGACATAGAAGATCTTGCCAATCATAAAGATAATTGCAACTTTAGATCTATAATATGTGAAAATGAGGGTTGCAATTCTAGATTTTGCGCATCTCATCTAAATGATCATGATTCAACTTGTCCTTTCAAGATAATTCCGTGTGAACAGAAGTGTCCTGCTAACATTATGAGACGTGAGATGGACAGACATTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATGCTATTGGTTGTCGATCAGCAGTTGCACAATGTATGATTGAAAAACATCGTTCTGATGATATTAATTCTCACTTGTGGCATTTTCTTAAAGGGATTTACAAAGAAGCATCTGGAGATGATCTCACTCGGCGAGTGGAACAAATAATAGAGGTAAGTAGCCGTTTAACAGAGGCTCGAGATGTTAGATCTTTAAGCTTCATTGTCAAGGATATTGAAGCTAAGCTAGAACCTTTCAAAGTAACGATTGTGGATAAAAGTGATGTAAAGACTGACGCCAATAATGGTGAAGAGGAAGGTGGCGAAAATAATATGAACAATGCTGAAAGAAGCATTAATATTTCAAATATGACCATTTCTCCAGATAAAGTTGAAGCGAGTGATACACTGAATGCATCACAAAATGAAGATAATAAGCCTAGTTATGTTGAAAATGAAGGTCATAAAGAAAGGACAGAAACTTCAAATATGACAAATGTATCTGATACTACTAAAACTGACCTCTTGAATGACAATAATCAAGATGTTGCAACTTCAGAATTAACAACTAAAGCAGATGATGAAAAGAGCATTCAAACACTCAACAAAAATATGTCCAATGAGGAAGTTGGTGTAAAAAACAAGAACGATGCAGAGAATGATACTAAAAGCAAACCTATTGAAGACAATGAGCAAATACTAAATGAAGACAATAAATTCAAAGGTAAGGATGACCAACAAAACATATATAATTCAAAAATGGAACTCAAGGATGGTGCACAGAGTAATGTCAAGGATAAAGATGGTGAAGATGACAACTAA 1572 0.355 MDMPTIDVDLGPEKFEEEKQGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTAGSVAVDMRKEMIEYLTQRSESFVAESVILEGGPDGEVSDHPYDIISNLVDDFASSKRNLFSRVSGWLLSEKREDNIEDFVQEMEVNGFWTLERREKIAETLLKNVDFENSYHCNMSFNDIEDLANHKDNCNFRSIICENEGCNSRFCASHLNDHDSTCPFKIIPCEQKCPANIMRREMDRHCITVCPMKLVNCPFYAIGCRSAVAQCMIEKHRSDDINSHLWHFLKGIYKEASGDDLTRRVEQIIEVSSRLTEARDVRSLSFIVKDIEAKLEPFKVTIVDKSDVKTDANNGEEEGGENNMNNAERSINISNMTISPDKVEASDTLNASQNEDNKPSYVENEGHKERTETSNMTNVSDTTKTDLLNDNNQDVATSELTTKADDEKSIQTLNKNMSNEEVGVKNKNDAENDTKSKPIEDNEQILNEDNKFKGKDDQQNIYNSKMELKDGAQSNVKDKDGEDDN* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0645 523 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 397 IPR043211 -
Vra3g0645 523 ProSiteProfiles Zinc finger TRAF-type profile. 211 263 IPR001293 GO:0008270
Vra3g0645 523 SUPERFAMILY TRAF domain-like 199 271 - -
Vra3g0645 523 MobiDBLite consensus disorder prediction 413 429 - -
Vra3g0645 523 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Vra3g0645 523 MobiDBLite consensus disorder prediction 398 412 - -
Vra3g0645 523 MobiDBLite consensus disorder prediction 451 523 - -
Vra3g0645 523 MobiDBLite consensus disorder prediction 382 397 - -
Vra3g0645 523 MobiDBLite consensus disorder prediction 382 429 - -
Vra3g0645 523 MobiDBLite consensus disorder prediction 509 523 - -
Vra3g0645 523 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 397 - -
Vra3g0645 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 280 IPR013083 -
Vra3g0645 523 MobiDBLite consensus disorder prediction 460 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0645 Vra-Chr3 6988100 6991301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0645 - - gmx:100799182 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0645 3 6988100 6991301 Vra3g0645 3 6988100 6991301 ECH
Vra3g0645 3 6988100 6991301 Vra8g0201 8 2385610 2390020 PCT