Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0176 ATGCTTCAGTTTCGGTTAAAACCCGTAAGGGCTTTCGCAGCGAAGCCGTCACCGTTGGTGGCTTTCGTCACGGTAATCGTCATTGGAGTGGTGGGATTTTATTCCCTGCATTTCCCTTTCCGTTCCGCCACTTCCCTCGACGCATCGCGCTTCGGCCACGTGTTCCTCTCGTCCTCCTCCAACGCCACGATCTCCAACTACCTGCGGGCGCTCACCCTGCACCCTCACCTCGCGGGAACGAAACCCGCCTCCCTAACCGCGCGCTACGTGCTCAACCACTTCACTGCCCTCGGGCTCCGAACCAGCACCGCTAAGCACCGCGTGCTATTGTCCTACCCGCTGCGCTCCTCTCTCTCGGCGCATTTTGGTGACGGTTCGAGTTTGGAGTTTCAGTTGGGGGAGGGAGAGGGGGACGGGGAGGTGGTGGCGCCGTACCACGCGTACTCGCCGTCGGGGTCGGCGTGGGCTGCGGCGGTGTTCGTGAACTACGGGCGGGAGGAGGACTTCCGGTTGCTGGCGGCGGCGGGGGTGAAGGTGGCGGGGTGCGTTGCGGTGGCCAGGAGCGACGGGGGATTGGGGCGTGGGGCGGTGGTGGAGGCGGCGGAGAGGCATGGTGCGGCGGCAGTGATGGTGTTCAGGGAGGGGGACACGTGGCCCCGAGGTTTTGAGAGGGGATACGTGATGAGAGGGGGGATTGGGGACCCGCTGAGTCCTGGGTGGGGTGGGGTGGATGGCGGCGAGAGTTTGGGTTTGGATGATAGTGAGGTTTTGAGAAGGTTTCCTAAAATTCCATCCATGCCTTTGTCTTTTGAGGCTGCTGAGAGGATCTTGGCCTCTCTTGGTGGAGCTCCTCTGCCGTTGGATTGGAGGGGTACCCTAAAGTCCTCCAAGGTTACGAATGTTGGTCCTGGCCCCACCATCCTCAATTTCACTTATGAGGGAGAAATGAAAATGGCTACCATTGAAAACGTTTTTGCCATTATCAAGGGACGGGAAGAATCTGATCGCTATGTTCTGCTCGGGAACCATAGAGATGCATGGACATATGGTGCTGTTGACCCCAACAGTGGGTCAGCTGCCCTACTTGACATTGCTCGTAGATATGCTATTCTATTGCGTATGGGGTGGACTCCACGGAGGACCATCGTTCTATGCAGTTGGGATGCAGAAGAATTTGGAATGATAGGATCCACAGAGTGGGTTGAACAAAACCTTGTTAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTAGACTGTGCTGTTCAAGGGCCTGGCTTATTTGCTGGATCAACTCCTCAGCTAGATGATCTCCTTCTCGATATCATCAAAGAGGTCAAGGATCCTGACTCTGATGAGGGTACAACGATATATCAGAATTGGGCAGCTGGTGGTGGAAAATCTAATATTCAAAGGCTGAGTAGAGTTGATTCTGATTTTGTTCCATTTGTGCAACATGCAGGGGTTCCATCTATTGATATGTATTATGGAAAAGATTATCCTGTTTATCACACTGCTTTCGACTCCTACAACTGGATGACAGAGTTTGGAGATCCATTCTTTCTGCGCCATGTAGCTGTCAGTGGAATTTGGGGGCTACTAGCACTTCGTCTTGCTGATGATTCCATTATACCTTTCAATTATGTGTCTTATGCGGATCAGTTACAGGTGTACAATGACATATTGAGCAACTTGTTAGACAAGCAAATTTCTCTACATCCACTAACTGCGTCGATTCAAGAATTTGCTTCTGCTGCCAAAGAAGCTAATGAGGAATCAAAGAAACTGAGACTGCAAGAAAACAAAGATGATTTTGTGGATATGAAGATACGAGCATTGAATGATAGATTAATGCTTACGGAAAAAGGTTTCTTAGATGTTGACGGGCTTCCAGGAAGAAAATGGTTCAAGCATCTTGTTTTTGGGCCTACCAGAGACCATGAAAGCAAGTTGGATTTCTTCCCTGGAATCGCTGACTCTATGTCTGAGATGTTTAAAATGAGTGAAAAAGAAAGGCTGGCAGCAATTCAACATGAGCTTTGGAGGGTGGTTAGAGCTATTCAAAGAGCTGCTTCAGCACTAAGAGGAGATTTGGCCTAA 2100 0.509 MLQFRLKPVRAFAAKPSPLVAFVTVIVIGVVGFYSLHFPFRSATSLDASRFGHVFLSSSSNATISNYLRALTLHPHLAGTKPASLTARYVLNHFTALGLRTSTAKHRVLLSYPLRSSLSAHFGDGSSLEFQLGEGEGDGEVVAPYHAYSPSGSAWAAAVFVNYGREEDFRLLAAAGVKVAGCVAVARSDGGLGRGAVVEAAERHGAAAVMVFREGDTWPRGFERGYVMRGGIGDPLSPGWGGVDGGESLGLDDSEVLRRFPKIPSMPLSFEAAERILASLGGAPLPLDWRGTLKSSKVTNVGPGPTILNFTYEGEMKMATIENVFAIIKGREESDRYVLLGNHRDAWTYGAVDPNSGSAALLDIARRYAILLRMGWTPRRTIVLCSWDAEEFGMIGSTEWVEQNLVNLGSKAVAYLNVDCAVQGPGLFAGSTPQLDDLLLDIIKEVKDPDSDEGTTIYQNWAAGGGKSNIQRLSRVDSDFVPFVQHAGVPSIDMYYGKDYPVYHTAFDSYNWMTEFGDPFFLRHVAVSGIWGLLALRLADDSIIPFNYVSYADQLQVYNDILSNLLDKQISLHPLTASIQEFASAAKEANEESKKLRLQENKDDFVDMKIRALNDRLMLTEKGFLDVDGLPGRKWFKHLVFGPTRDHESKLDFFPGIADSMSEMFKMSEKERLAAIQHELWRVVRAIQRAASALRGDLA* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0176 699 SUPERFAMILY PA domain 108 325 IPR046450 -
Vra8g0176 699 Pfam PA domain 139 224 IPR003137 -
Vra8g0176 699 Gene3D Zn peptidases 62 545 - -
Vra8g0176 699 SUPERFAMILY Zn-dependent exopeptidases 60 542 - -
Vra8g0176 699 CDD M28_PSMA_like 319 546 - -
Vra8g0176 699 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 39 698 IPR039373 -
Vra8g0176 699 Pfam Transferrin receptor-like dimerisation domain 570 694 IPR007365 -
Vra8g0176 699 Pfam Peptidase family M28 323 511 IPR007484 -
Vra8g0176 699 Gene3D - 549 699 IPR036757 -
Vra8g0176 699 Coils Coil 579 599 - -
Vra8g0176 699 SUPERFAMILY Transferrin receptor-like dimerisation domain 545 696 IPR036757 -
Vra8g0176 699 Gene3D - 116 314 - -
Vra8g0176 699 PANTHER F10A2.10 PROTEIN-RELATED 39 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0176 Vra-Chr8 2080855 2100912 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0176 K01301 - gmx:100817485 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0176 8 2080855 2100912 Vra8g0176 8 2080855 2100912 ECH
Vra3g0639 3 6951609 6956801 Vra8g0176 8 2080855 2100912 PCT