Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0639 ATGATGCCTAAACCCATGAACGTTTTGACAACAAAGCCCTCACCTTTGAGTACCATGGTGGTGGTGCTGATACTCTGCATTCTGGGTTTCTATGCTCTGCATTTCCCTCACTCTTCTACACCTTCCTCCTCCTCTCAAAACCTCTCTCAGGTGGAAAAACTTTTTCTCTCCTCTTCCTCAAACTCCACCATTTCTTCCTACCTCCGTGCCCTCACCCTGCACCCTCACCTCGCCGGAACAAAACCCGGCTCCGATGTCGCCAACTACGTCCTCAACCACTTCACTTCATTAGGACTCAAGACCCACACGGCGACCTACACCACGCTCCTCTCTTTCCCGGTTCACTCCTCCCTCTCAGCGCATTTTAGCGAAGGCCCCTCGGTGAGCCTCCGCCTCACGGAGCCAGCAGCCGCGGGCGTGGTTCCGGCCTACCACGCGTATTCGCCGTCCGGCGCGGTGCACGCGAGTGCGGTGTTTGCAAACTACGGGAGGGAGAGGGACTACCGCGCGCTGGCTGCGATGGGAGTGAACGTGAGTGGGTGCGTGGTGATGGTGCGGAAGGGCGGTGAGATGGGGCGCAGCGCAGTAGTGGAGAGAGCAGAGGCGCACGGAGCTGCGGCGGTTTTGGTTTACGGCGAGGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGACACGTGATGAGGGGAGGAATAGGGGACCCACTTACTCCGGGTTGGGCTGGGGTTGAGGGTGGCGAGACACTGGGATTGGAAGATAGTGAGGTTTTGAAAAGGTTTCCCAAAATTCCATCTATGCCTTTATCAGCTGAGGTGGCTGACTCTATTTTGTCCTCTCTTGGGGGTTCTCCTGTGCCCCTTGAATGGAGGGTCACCCTAAGGTCTAAGGTCAGGCATGTTGGTCCGGGTCCCACCGTCCTCAATTTCACTTACCAGGATGAAAAAAAGGTGGCCAACATTCAAAATGTTTTTGCTGTCATAAAGGGGTCAGAAGAACCTGATCGATGTGTTCTGCTTGGGAACCACAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGAACAGCTGCACTACTTGACATTGCTCGTCGGTTTTCTGTTCTGTTAGGCTTGGGGTGGAAGCCAAGGAGGACAATAATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCTACTGAATGGGTTGAACAAAACCTTATTAATCTGGGTTCCAAAGCTGTAGCATACCTTAATGTGGACTGTGCTGCTCAGGGTCCTGGTTTTTTTGTTGGTTCAACTCCTCAACTAGACAGTCTTATTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGATTCTGAGGGTGTATCAATATATGAGAATTGGGCTGCTGCTTCTGCTGGAAGCAATAAGATTCAGAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATATATTATGGAAGAGATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGCAGATCCATTCTTCCACCGCCATGTTGCTGTTACAGGAGTTTGGGGGCTTCTAGCCCTTCACTTAGCTGGCGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTACAGCTGTACAAAAACATGTTGAGCAACTTGGTAGATCAGAAAATTTCCCTACATCCATTAACTCTTTCAATTGAAGAATTTGCTTCCGCTGCCAAAGAAGCTGATGATGAATCAAAGAAACTGAGATTGCAAGAAACAGAAGGCTGTGTTGTGGATATCAAAAAACGAGCATTGAATGACAGACTAATGCTTGCTGAAAAAGGGTTCTTGGATGCAGATGGACTTCAAGGAAGGCAGTGGTTCAAGCATCTCGTGTATGGGCCGTCAAGCAACAATGAAAGACTCAATTTCTTCCCTGGGATTTCTGATTCTATTACTGGTTCTACTGGTGTAACTGAAACAGAAAGGCTAGCATCAATTCAACATGAGATCTGGAGAGTTGCCAGAGCCATTCGTAGAGCTGCTTCTGCACTCACAGGAGAATTCACTTAA 2091 0.495 MMPKPMNVLTTKPSPLSTMVVVLILCILGFYALHFPHSSTPSSSSQNLSQVEKLFLSSSSNSTISSYLRALTLHPHLAGTKPGSDVANYVLNHFTSLGLKTHTATYTTLLSFPVHSSLSAHFSEGPSVSLRLTEPAAAGVVPAYHAYSPSGAVHASAVFANYGRERDYRALAAMGVNVSGCVVMVRKGGEMGRSAVVERAEAHGAAAVLVYGEGDTWRKGFERGHVMRGGIGDPLTPGWAGVEGGETLGLEDSEVLKRFPKIPSMPLSAEVADSILSSLGGSPVPLEWRVTLRSKVRHVGPGPTVLNFTYQDEKKVANIQNVFAVIKGSEEPDRCVLLGNHRDAWTYGAVDPSSGTAALLDIARRFSVLLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAAQGPGFFVGSTPQLDSLILEVTKKVKDPDSEGVSIYENWAAASAGSNKIQRLSGVDSDFAPFVQHAGVPSIDIYYGRDFPVYHTAFDSYNWMAEYADPFFHRHVAVTGVWGLLALHLAGDPILPFNYVSYANELQLYKNMLSNLVDQKISLHPLTLSIEEFASAAKEADDESKKLRLQETEGCVVDIKKRALNDRLMLAEKGFLDADGLQGRQWFKHLVYGPSSNNERLNFFPGISDSITGSTGVTETERLASIQHEIWRVARAIRRAASALTGEFT* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0639 696 CDD M28_PSMA_like 279 544 - -
Vra3g0639 696 Gene3D - 116 312 - -
Vra3g0639 696 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 14 694 IPR039373 -
Vra3g0639 696 Coils Coil 577 597 - -
Vra3g0639 696 Pfam PA domain 155 215 IPR003137 -
Vra3g0639 696 Gene3D Zn peptidases 62 543 - -
Vra3g0639 696 SUPERFAMILY Zn-dependent exopeptidases 60 541 - -
Vra3g0639 696 Pfam Transferrin receptor-like dimerisation domain 568 691 IPR007365 -
Vra3g0639 696 Pfam Peptidase family M28 321 509 IPR007484 -
Vra3g0639 696 Gene3D - 546 696 IPR036757 -
Vra3g0639 696 SUPERFAMILY PA domain 109 323 IPR046450 -
Vra3g0639 696 SUPERFAMILY Transferrin receptor-like dimerisation domain 543 693 IPR036757 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0639 Vra-Chr3 6951609 6956801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0639 K01301 - gmx:100798131 1215.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0639 3 6951609 6956801 Vra3g0639 3 6951609 6956801 ECH
Vra3g0639 3 6951609 6956801 Vra8g0176 8 2080855 2100912 PCT