Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0130 ATGTCGGTGAAGGAGTGCGACCACCACAAGGGAAAGAAGAGGAGGACTTTCCAGCGAGTCTTCTGGTGCATAGTCGTCTTCCTCTTCCTTGTCTTGCTCGCTATTCTTCTCATATGGGCAATCCTCAGACCCACCAAACCTACCTTCACTCTTCAAGACGTCACCGTTTACGCCTTCAACGCCACCGTCCCCAACTTCTTGACATCCAGTTTCCAAGTCACGCTCATCTCCCGCAACCCTAACGACCACATCGGAGTCTACTACGACCGCCTCGAAACCTACGTCACTTACCAGAGCCAGCAGGTCACCTTCCGCACCTCCATCCCTCCCACCTATCAGGGCCACAAAGAGGTCAACGTTTGGTCTCCCTTTGTCTACGGCACCAACGTCCCCGTCGCACCCTTCAACTTCCAAGGCCTCAGCCAGAACCAGGCTGCGGGTACCGTCCTCATCACCGTCAGAGCTAACGGCAGGGTCCGCTGGAAGGTCGGCACCTTCATCTCCGGCCGCTACCACCTCTACGTCCGCTGCCCCGCCTTCATCTCCTTCGGCGCCCGCGGCAACGGCATCGTCGTCGGCGAAAACGCCATCAAGTTCCAGATCATCCAACGATGCTCCGTCAGCGTTTAA 630 0.5714 MSVKECDHHKGKKRRTFQRVFWCIVVFLFLVLLAILLIWAILRPTKPTFTLQDVTVYAFNATVPNFLTSSFQVTLISRNPNDHIGVYYDRLETYVTYQSQQVTFRTSIPPTYQGHKEVNVWSPFVYGTNVPVAPFNFQGLSQNQAAGTVLITVRANGRVRWKVGTFISGRYHLYVRCPAFISFGARGNGIVVGENAIKFQIIQRCSVSV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0130 209 Pfam Late embryogenesis abundant protein 77 177 IPR004864 -
Vra8g0130 209 PANTHER OS05G0367900 PROTEIN 4 209 IPR044839 GO:0098542
Vra8g0130 209 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0130 Vra-Chr8 1455818 1457364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0130 14 177 EF-hand Containing Proteins AT5G21130 20.122 8.29e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0130 - - gmx:100788592 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0130 8 1455818 1457364 Vra8g0130 8 1455818 1457364 ECH
Vra3g0599 3 6534447 6535499 Vra8g0130 8 1455818 1457364 PCT