Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0599 ATGTCGGTGAAGGAGTGCCACCACCACAAGGGAAAGAAGCACAAGCTCTTCAAACGCATATTCTGGGGTATAGTCATCTTCGCGTTCATCGTGCTGCTCACGGTTCTCATAATCTGGGCGATTCTCAAGCCAACCAAGCCAACCTTCATCCTCCAAGACGTCACCGTGTTCGGGTTCAACGCCACCGTCCCGAACCTCCTCACCTCAAGTTTTCAGGTCACGCTTTCCTCGCGCAACCCCAACGACAAAATCGGCATCTACTACGACCGTCTCAGCACCTACGTCAGCTATAGGAACCAGCAAGTCACGTACCGAACCTCAATCCCTCCCTCCTACCAAGGTCATAAGGAAGAAGACGTGTGGTCCCCATTCGTCTACGGAAACAACGTCCCCGTCGCGCCCTACAACTTCCTCGGCCTCAGTCAGGATCAGTCTGACGGCAACGTCCTCGTCATCGTTAAAGTTGACGGTAAAGTCCGATGGAAGGTCGGCTCCTTTACCTCCGGCCACTACAACCTCTATGTAAGGTGCCCTGCTTTCATAACCTTTGGCCCTCGAAGCACCGGGATTGCTCTCGGCAATAACGCCGTCAAGTATCAACTGGTTCAGCGCTGCACCGTCGGGGTTTGA 630 0.5397 MSVKECHHHKGKKHKLFKRIFWGIVIFAFIVLLTVLIIWAILKPTKPTFILQDVTVFGFNATVPNLLTSSFQVTLSSRNPNDKIGIYYDRLSTYVSYRNQQVTYRTSIPPSYQGHKEEDVWSPFVYGNNVPVAPYNFLGLSQDQSDGNVLVIVKVDGKVRWKVGSFTSGHYNLYVRCPAFITFGPRSTGIALGNNAVKYQLVQRCTVGV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0599 209 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 209 - -
Vra3g0599 209 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Vra3g0599 209 PANTHER OS05G0367900 PROTEIN 4 209 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0599 Vra-Chr3 6534447 6535499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0599 13 177 EF-hand Containing Proteins AT5G21130 21.965 2.81e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0599 - - gmx:100795832 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0599 3 6534447 6535499 Vra3g0599 3 6534447 6535499 ECH
Vra3g0599 3 6534447 6535499 Vra8g0130 8 1455818 1457364 PCT