Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0122 ATGCCTCCTCCTCCTTCTCTTGTTTTCTCTATACTCTGTTTTCTCTCTGTCTTCATCTTCACTTCATCATCCACACCCAACACCATCACCCTCCCTCTCTCCCACATATTCACCAACCACCCTTCTTCGCAGCCATTCCACAACCTCAAATTCGCTGTTTCAACTTCCATCACGAGAGCCCGCCACCTAAAAAATCACCAACCCACCCCACTCAAAACCCAAATCCACCCCAAAAGCTACGGAGGATACTCCATCGACCTCAATTTCGGAACCCCGCCACAAACCTTCTCCTTTATTCTCGACACCGGAAGCACCCTCGTCTGGCTCCCATGCTCCTCCCACTACCTCTGCTCAAATTGCAACTCCTTCCACAATGCACCCAAATCTTTCATCCCCAAGAACTCTTCTTCCTCCAAGTTAGTGGGCTGCACCAACCCCAAATGCGCGTGGCTCTTCGGCGCCAACGTTGAATCGCGCTGTTGCAAACAAAACACTGCAACCGCCAACTGTTCACTCACATGCCCTGCTTACACTGTCCAATACGGGCTGGGCTCAACCGCGGGCTTTCTCCTCTCAGAAAATCTCAACTTTCCCGCGAAGATCCTCCCCGATTTTCTCGTCGGCTGCTCCATCGTCTCCGTCTACCAGCCAGCCGGAATCGCGGGCTTCGGCCGCGGTCCGGAGTCCCTTCCGTCGCAGATGAACCTCACTGGATTCTCTTACTGCTTACTCTCACACCAGTTCGACGAGTCGCCGGAAACTAGCGACCTCGTCTTACACACTTCCTCCTCAGACAAGAAACGAACAAACGACGTCAGCTACACGCCTTTCCTGAAAAACCCGTCGAGCAAAAACCCCGCGTTCGGTGCGTACTATTACCTTACTCTCAGGAGAATCGTCGTTGGGAAGAAGCGCGTGCGGGTTCCGAAGAGGCTTCTAGAGCCTGACGTTGACGGTAACGGTGGGACTATCGTGGACTCGGGGTCAACCTTCACGTTCATGGAAAGGCCAATTTTTGATTTGATAGCACAAGAGTTTGCGAAGCAGGTGAACTACACGCGCGCCAGGGAGGTGGAGAAACAATCCGGGTTGAGTCCGTGTTTTGTGGTGTCTGGAACGGCGTCGTTTCCGGAGCTCCGGTTCGAGTTCAGGGGCGGCGCGAAGATGAGTCAGCCGCTGACGAATTATTATTCGTTGGTCGGGAAATCCAACGTGGCTTGTTTGACTATTGTGTCTGATGACGTGGCGGGTCCCGGCGTGGCTGGTGGGCCCGCTGTGATATTGGGAAACTATCAGCAGCAGAATTTCTACATTGAGTATGACTTGAGAAACGAGAGGTTCGGATTTCGGAGTCAGAGTTGCAAAACGCGCGTTTAA 1377 0.5301 MPPPPSLVFSILCFLSVFIFTSSSTPNTITLPLSHIFTNHPSSQPFHNLKFAVSTSITRARHLKNHQPTPLKTQIHPKSYGGYSIDLNFGTPPQTFSFILDTGSTLVWLPCSSHYLCSNCNSFHNAPKSFIPKNSSSSKLVGCTNPKCAWLFGANVESRCCKQNTATANCSLTCPAYTVQYGLGSTAGFLLSENLNFPAKILPDFLVGCSIVSVYQPAGIAGFGRGPESLPSQMNLTGFSYCLLSHQFDESPETSDLVLHTSSSDKKRTNDVSYTPFLKNPSSKNPAFGAYYYLTLRRIVVGKKRVRVPKRLLEPDVDGNGGTIVDSGSTFTFMERPIFDLIAQEFAKQVNYTRAREVEKQSGLSPCFVVSGTASFPELRFEFRGGAKMSQPLTNYYSLVGKSNVACLTIVSDDVAGPGVAGGPAVILGNYQQQNFYIEYDLRNERFGFRSQSCKTRV* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0122 458 Pfam Xylanase inhibitor N-terminal 83 250 IPR032861 -
Vra8g0122 458 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Vra8g0122 458 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Vra8g0122 458 PRINTS Pepsin (A1) aspartic protease family signature 426 441 IPR001461 GO:0004190|GO:0006508
Vra8g0122 458 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Vra8g0122 458 Pfam Xylanase inhibitor C-terminal 292 450 IPR032799 -
Vra8g0122 458 CDD pepsin_A_like_plant 82 454 IPR034161 -
Vra8g0122 458 Gene3D Acid Proteases 59 252 IPR021109 -
Vra8g0122 458 Gene3D Acid Proteases 259 458 IPR021109 -
Vra8g0122 458 PANTHER BNACNNG47670D PROTEIN 4 454 - -
Vra8g0122 458 SUPERFAMILY Acid proteases 79 454 IPR021109 -
Vra8g0122 458 ProSiteProfiles Peptidase family A1 domain profile. 83 450 IPR033121 -
Vra8g0122 458 PANTHER OS07G0603500 PROTEIN-RELATED 4 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0122 Vra-Chr8 1356132 1357853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0122 70 454 Miscellaneous Gene Families AT1G44130 23.601 5.56e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0122 - - gmx:100808552 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0122 8 1356132 1357853 Vra8g0122 8 1356132 1357853 ECH
Vra3g0594 3 6506552 6508341 Vra8g0122 8 1356132 1357853 PCT