Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0594 ATGGCTCTTCCTAATTACATCATTCTCTTATCTCTAACTCTCATCTCTCATACTGCACTCACTTCCTCCACCATCATTCTCCCTCTCTCCCCTCTGCTCACCAAACCTCAATCCTCCGGTCGCTTCCAATCTCTCAAACTCGCCGCTTCAGCTTCTCTAACTCGGGCCCACCACCTCAAACACCGCCAAAATGCTTCCTCAGTTGCCACAACCCAAGTCTACCCCAAAAGCTACGGTGGCTACTCCATAGATCTCAACTTCGGAACCCCACCCCAAACCTCCCCCTTCGTTCTCGACACAGGAAGTAGTCTCGTCTGGTTCCCCTGCACCACCCGCTACATCTGCTCCCACTGTCTCTTCCCAAACATTGACCCCACCAAAATCCACACTTTCATTCCCAAAAATTCCTCCACCGCCAAACTCCTCGGTTGCAGGAACCCCAAATGCGGTTACCTCTTCGGCTCCGACCTTCAATCTCGCTGCCCCCAATGCCAACCCAATTCTCAAAACTGTTCCGTCACTTGTCCCCCTTACATTATCGAATACGGGTTGGGCTCCACTGCGGGCTTTTTGCTCCTCGACAATCTCAATTTCCCTTCAAAAATCGTTCCCCAATTTCTCGTCGGTTGCTCCATCCTCTCCATCCGCCAACCCTCCGGCATCGCCGGCTTCGGTCGCGGCCAAGACTCTCTCCCTTCGCAAATGGCCCTCAAGAGATTCTCTTACTGCTTACTCTCCCACAGCTTCGACGACTCCACGGAAAACAGCGACCTCGTTTTACACATAAGCTCCACCGGCGACACCAAAACCAACGGCCTCAGCTACACGCCGTTTCACCCCAACCCTTCTGCCAGCAACCCCGCCTTTCTGGAATATTACTATCTCAGCCTCCGTAAGGTCATTGTCGGCGGCAAGAAAGTTAAGATTCCGTTTAGCTTTTTGGACCCCGGCTCTGACGGTCACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACTTTCATGGAACGCCCGGTTTATGATTTGGTGGCCCAAGAGTTTGTGAAGCAGTTGGGGAACTTTTCCAGGGCGGAGGACGTTGAGGCTCAATCTGGGTTGGGTCCCTGTTTTAATACTTCCGGCGCCAAGACCGTGAATTTCCCTGAGTTTACTTTTCAGTTCAAAGGCGGCGCAAAAATGACGCTGCCGGTTGAAAATTATTTCTCCTTGATCGACGACTCGGAGGTGGTGTGTCTGACCGTGGTCTCCGACGGTGGAGCCGGTCCGGCGAAGATGTCTGGTCCCGCTATCATTTTGGGGAATTATCAGCAGCAAAATTTCCACATTGAATATGATTTGGAGAATGAGAGGTTCGGGTTCGGCCCTCAGAGTTGCAAAAAGAAAACTTAG 1389 0.5227 MALPNYIILLSLTLISHTALTSSTIILPLSPLLTKPQSSGRFQSLKLAASASLTRAHHLKHRQNASSVATTQVYPKSYGGYSIDLNFGTPPQTSPFVLDTGSSLVWFPCTTRYICSHCLFPNIDPTKIHTFIPKNSSTAKLLGCRNPKCGYLFGSDLQSRCPQCQPNSQNCSVTCPPYIIEYGLGSTAGFLLLDNLNFPSKIVPQFLVGCSILSIRQPSGIAGFGRGQDSLPSQMALKRFSYCLLSHSFDDSTENSDLVLHISSTGDTKTNGLSYTPFHPNPSASNPAFLEYYYLSLRKVIVGGKKVKIPFSFLDPGSDGHGGTIVDSGSTFTFMERPVYDLVAQEFVKQLGNFSRAEDVEAQSGLGPCFNTSGAKTVNFPEFTFQFKGGAKMTLPVENYFSLIDDSEVVCLTVVSDGGAGPAKMSGPAIILGNYQQQNFHIEYDLENERFGFGPQSCKKKT* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0594 462 PANTHER OS07G0603500 PROTEIN-RELATED 7 458 - -
Vra3g0594 462 Pfam Xylanase inhibitor C-terminal 293 454 IPR032799 -
Vra3g0594 462 SUPERFAMILY Acid proteases 76 458 IPR021109 -
Vra3g0594 462 Gene3D Acid Proteases 55 253 IPR021109 -
Vra3g0594 462 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Vra3g0594 462 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Vra3g0594 462 PRINTS Pepsin (A1) aspartic protease family signature 430 445 IPR001461 GO:0004190|GO:0006508
Vra3g0594 462 CDD pepsin_A_like_plant 80 458 IPR034161 -
Vra3g0594 462 ProSiteProfiles Peptidase family A1 domain profile. 81 454 IPR033121 -
Vra3g0594 462 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 96 107 IPR001969 GO:0004190|GO:0006508
Vra3g0594 462 PANTHER BNACNNG47670D PROTEIN 7 458 - -
Vra3g0594 462 Pfam Xylanase inhibitor N-terminal 81 258 IPR032861 -
Vra3g0594 462 Gene3D Acid Proteases 260 462 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0594 Vra-Chr3 6506552 6508341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0594 40 460 Miscellaneous Gene Families AT1G77480 24.183 8.78e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0594 - - gmx:100805927 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0594 3 6506552 6508341 Vra3g0594 3 6506552 6508341 ECH
Vra3g0594 3 6506552 6508341 Vra8g0122 8 1356132 1357853 PCT