Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0114 ATGACGCTTGGCTCGGGAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAACGAGGAGAAAAAGGTATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATACTGTACATGAAGGAAGAATCTATCAACTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAAATGGAGTGGTTGAACCAAAGAAGTTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACAATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCAGCTCCTCATAACCGGAAGCTTGTCCAGCCCCCAGAAGGTACCTACTTTTAG 441 0.4558 MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHENGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0114 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
Vra8g0114 146 PANTHER - 9 140 - -
Vra8g0114 146 SMART ubc_7 16 144 - -
Vra8g0114 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
Vra8g0114 146 Pfam Ubiquitin-conjugating enzyme 43 136 IPR000608 -
Vra8g0114 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 140 - -
Vra8g0114 146 Gene3D Ubiquitin Conjugating Enzyme 4 146 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0114 Vra-Chr8 1243220 1246258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0114 K10704 - pvy:116143857 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0114 8 1243220 1246258 Vra8g0114 8 1243220 1246258 ECH
Vra3g0583 3 6414272 6418141 Vra8g0114 8 1243220 1246258 PCT