Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0583 ATGACGCTTGGCTCTGCGGGATCCAGTGTCGTGGTTCCGAGGAACTTCAGATTGCTGGAGGAACTTGAAAAGGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGACGATGGTGATGATATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCTATAATACTGTACACGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGATTACCCAGAAAAGCCTCCAACTGTTCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCATCGAAGGTTTACCATGGAAGATATATTGACCCAACTGAAGAAGGAAATGGCGGCTTCACATAACCGCAAGCTTATCCAGCCTCCTGAAGGTACTTGCTATTAG 441 0.4263 MTLGSAGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWHRRFTMEDILTQLKKEMAASHNRKLIQPPEGTCY* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0583 146 Pfam Ubiquitin-conjugating enzyme 43 132 IPR000608 -
Vra3g0583 146 PANTHER - 9 140 - -
Vra3g0583 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
Vra3g0583 146 Gene3D Ubiquitin Conjugating Enzyme 3 146 IPR016135 -
Vra3g0583 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 140 - -
Vra3g0583 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
Vra3g0583 146 SMART ubc_7 16 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0583 Vra-Chr3 6414272 6418141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0583 K10704 - gmx:100789495 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0583 3 6414272 6418141 Vra3g0583 3 6414272 6418141 ECH
Vra3g0583 3 6414272 6418141 Vra8g0114 8 1243220 1246258 PCT