Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3547 ATGAGTGCTATTGCGAGGCACGAGCGCCGATGGGCGTCCGACACTGTTCCCGGAAGACCCACTGTCAGCGCCGGAACTTCGCCGGGAACTGATTCCACCTCCGCCGCGGAGGAGTTCGTGGAGGTTACTCTTGATCTTCAAGATGATGACACCATCGTTCTTCGGAGCGTCGAGCCAGCCTCGGTTATTAACATCGACGACGGCGTCGCCGGCAGCGGATACGAGACTCCGGCGTCGGTATCGAGGTCGCCGACGATTCGGCGGAGCTCGTCGCGGGGCTTCCGGCAGTTCTCACAGGAGCTGAAGGCGGAGGCTGTGGCGAAGGCGAGGCAGTTCTCGCAGGAGCTAAAATCGGAGCTACGGCGGTTCTCGTGGAGCCATAGCCAGGCTTCGCGCGCGTTTTCGTCTTCCTCGGGTCCTAACGGCGCCGGAGGTGGATTCGAAACGGCGCTGGCCGCTCGTGCTCTCAGGAGGCAACGCGCGCAGCTTGATCGCACGCGCTCCGGTGCGCACAAAGCGCTTCGCGGTCTGAAATTTATCAGTAGCAAATCGAATGGTGTTGATGCGTGGAACGAGGTGCAGAACAGCTTCGATAGACTCTCTAAGGATGGATTTCTCAATCGGGCCGATTTTGCGCAATGCATAGGTATGAAGGATTCGAAGGAATTCGCTCTGGAACTGTTTGATGCTCTGAGTCGTAAACGAAGATTGAAAGTTGACAATATCAACAGGGAAGAACTGTTTGAATTCTGGTCGCAAATTACTGATCAAAGTTTCGATTCCCGGCTTCAGATCTTCTTCGACATGGTGGACAAGAACGAGGATGGGAGAATCACAGAAGAAGAAGTGAAAGAGATCATCATGTTAAGCGCTTCTGCAAATAGGTTGTCCAGATTGAAGGAACAGGCCGAAGAATATGCAGCTCTTATCATGGAAGAGTTAGACCCCGAAGGACTTGGCTACATCGAGCTATGGCAACTGGAGACGCTTCTTTTACAAAAGGACACGTATCTCAACTACAGTCAAGCTCTAAGTTACACAAGCCAAGCTCTGAGCCAGAACCTACAGGGGTTAAGGAAGAAAAGTCCAATACGTAGAATGAGCCGCAGATTGATCTACTATTTGCAAGAGAATTGGAAGAGACTTTGGGTTTTAACATTGTGGGCTTGCATAATGACGGGGCTATTCACGTGGAAGTTTATACAGTACAAGCGGAAAGATGCATTTCATATCATGGGTTATTGTCTTTCCACGGCCAAGGGTGGGGCTGAGACTCTAAAATTCAACATGGCCCTTATACTCTTGCCCGTGTGCAGAAACACCATAACTTGGCTCAGGTCTACAACCAAGCTGGGCTATGCTGTACCTTTTGATGACAACATCAACTTTCACAAGACAATTGCTGGGGCCATTGTGATTGGTATTATACTTCATGCCGGAGATCACCTTGCTTGTGATTTTCCAAGACTTGTAAGTACGTCTGAAGACAATTATGAGAAGTATTTGAAAGGTGTATTTGGTGATAATAAACCCAGTTACGGAGACCTGGCTAAAGGCGTCGAGGGTGTGACTGGAATTTTGATGGTGATTCTTATGATAATAGCATTTACACTTGCAACCAAATGGTTCCGGAGAAATCTCATTAAGCTGCCTAAACCATTTAGTAGGCTCACTGGCTTCAATGCCTTCTGGTATTCACATCATCTGTTTGTCATCGTATACGTCCTTCTTATAATCCACGGAACAAAACTTTACCTCGTGCATAAATGGTACCTTAAAACGACATGGATGTATCTTGCGGTTCCAGTTTTACTTTATACGTCCGCAAGAATACTCAGACTATTTCGTTCTGGCCTGTATACAGTTCGTCTTGGAAAGGTTGCCATATATCCTGGAAATGTTCTCACATTGCAAATGTCTAAGCCTCCTCAATTTCGTTACAAGAGCGGACAATACATGTTTGTGCAGTGTCCTGCTGTTTCTCCGTTTGAATGGCATCCGTTCTCTATTACCTCAGCCCCTGGCGACGACTACCTGAGTGTTCATATTCGGCAACTGGGTGATTGGACACAGGAGCTTAAAAGGGTGTTCTCTGAGGCCTGTGAGCCTCCTGTATCTGGGAAGAGTGGGCTTCTCAGGGCTGATGAAACCACGAAGAAAAGTTTGCCGAAGTTAAAGATCGATGGACCTTACGGTGCACCGGCACAAGATTATAAAAAATATGATGTTTTGTTACTAGTCGGTCTCGGGATAGGAGCAACACCTTTCATCAGCATTCTAAAAGATCTTCTCAACAACATCATCAAAATGGAGGAAATGGCGGATTCAATCTCTGATATAAGTAGAGGTTCAGACCTTAGTGTTGGGAGTACTACAGACTCACCATCTCTTAATAAAATTGCGCCAAAACGGAAGAAAACACTTAAGACCACCAACGCTTATTTTTACTGGGTTACAAGAGAGCAAGGTTCTTTTGATTGGTTCAAAGGAGTCATGAATGAAGTAGCAGAGCTTGATCAAAGGGGTGTCATTGAGATGCACAACTACTTGACCAGCGTATACGAGGAAGGGGATGCTAGATCTGCCCTCATCACCATGGTACAAGCACTCAACCATGCCAAAAACGGAGTTGACATTGTTTCTGGGACCAGAGTGCGAACTCATTTTGCTAGGCCCAACTGGAAGAAGGTTTTCAATAAAATGTGCTCCAAGCACTATAATGGAAGAATAGGGGTATTTTATTGTGGTGCACCAGTTTTGGCCAAAGAACTGAGCAAGCTCTGCTTCGAGTTCAATGAAAAGGGTCCAACAAAATTTGAGTTCCACAAGGAGCACTTTTAA 2841 0.4696 MSAIARHERRWASDTVPGRPTVSAGTSPGTDSTSAAEEFVEVTLDLQDDDTIVLRSVEPASVINIDDGVAGSGYETPASVSRSPTIRRSSSRGFRQFSQELKAEAVAKARQFSQELKSELRRFSWSHSQASRAFSSSSGPNGAGGGFETALAARALRRQRAQLDRTRSGAHKALRGLKFISSKSNGVDAWNEVQNSFDRLSKDGFLNRADFAQCIGMKDSKEFALELFDALSRKRRLKVDNINREELFEFWSQITDQSFDSRLQIFFDMVDKNEDGRITEEEVKEIIMLSASANRLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGLRKKSPIRRMSRRLIYYLQENWKRLWVLTLWACIMTGLFTWKFIQYKRKDAFHIMGYCLSTAKGGAETLKFNMALILLPVCRNTITWLRSTTKLGYAVPFDDNINFHKTIAGAIVIGIILHAGDHLACDFPRLVSTSEDNYEKYLKGVFGDNKPSYGDLAKGVEGVTGILMVILMIIAFTLATKWFRRNLIKLPKPFSRLTGFNAFWYSHHLFVIVYVLLIIHGTKLYLVHKWYLKTTWMYLAVPVLLYTSARILRLFRSGLYTVRLGKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACEPPVSGKSGLLRADETTKKSLPKLKIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDLLNNIIKMEEMADSISDISRGSDLSVGSTTDSPSLNKIAPKRKKTLKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFNKMCSKHYNGRIGVFYCGAPVLAKELSKLCFEFNEKGPTKFEFHKEHF* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3547 946 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 617 737 IPR017927 GO:0016491
Vra7g3547 946 MobiDBLite consensus disorder prediction 1 35 - -
Vra7g3547 946 PANTHER RESPIRATORY BURST OXIDASE2 27 946 - -
Vra7g3547 946 Pfam FAD-binding domain 621 734 IPR013112 GO:0016491
Vra7g3547 946 ProSitePatterns EF-hand calcium-binding domain. 271 283 IPR018247 -
Vra7g3547 946 SUPERFAMILY Riboflavin synthase domain-like 620 733 IPR017938 -
Vra7g3547 946 PANTHER NADPH OXIDASE 27 946 - -
Vra7g3547 946 MobiDBLite consensus disorder prediction 19 35 - -
Vra7g3547 946 Gene3D - 732 946 IPR039261 -
Vra7g3547 946 Pfam Ferric reductase like transmembrane component 421 578 IPR013130 -
Vra7g3547 946 PRINTS Cytochrome B-245 heavy chain signature 523 546 IPR000778 GO:0016020|GO:0016491
Vra7g3547 946 PRINTS Cytochrome B-245 heavy chain signature 723 736 IPR000778 GO:0016020|GO:0016491
Vra7g3547 946 PRINTS Cytochrome B-245 heavy chain signature 746 763 IPR000778 GO:0016020|GO:0016491
Vra7g3547 946 ProSiteProfiles EF-hand calcium-binding domain profile. 258 293 IPR002048 GO:0005509
Vra7g3547 946 Gene3D - 163 279 - -
Vra7g3547 946 MobiDBLite consensus disorder prediction 76 93 - -
Vra7g3547 946 Coils Coil 289 309 - -
Vra7g3547 946 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 738 946 IPR039261 -
Vra7g3547 946 CDD EFh 222 288 IPR002048 GO:0005509
Vra7g3547 946 Gene3D Translation factors 611 700 - -
Vra7g3547 946 SUPERFAMILY EF-hand 190 340 IPR011992 -
Vra7g3547 946 Pfam Ferric reductase NAD binding domain 741 928 IPR013121 GO:0016491
Vra7g3547 946 CDD NOX_Duox_like_FAD_NADP 626 888 - -
Vra7g3547 946 SFLD NADPH oxidase subgroup (NOX) 104 946 - -
Vra7g3547 946 MobiDBLite consensus disorder prediction 74 93 - -
Vra7g3547 946 Pfam Respiratory burst NADPH oxidase 162 261 IPR013623 GO:0004601|GO:0050664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3547 Vra-Chr7 54815090 54824995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3547 9 946 Miscellaneous Gene Families AT1G64060 77.719 0.0 1521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3547 K13447 - gmx:100801077 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0253 11 1738121 1747068 Vra7g3547 7 54815090 54824995 PCT