Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0253 ATGAACGGTGCTCCAAAGCACGAACGCCGCTGGGCGTCTGATACGGTGCCGGATGTTGCATTCGTCAGCGGAGGGACGTCGCCGGGAACCGAGTCATACTCCGTCGCCGACGAGTACGTCGAGGTCACGCTCGACGTTCAAGACGATCACACCATCGTTCTCCGCGGCGTTGAGTCGGTGACTGTCGTTAACGTCGACGAAGGCTGTGCTGCAAGCGGAAACGAAACTCCGGTGTCTTCTGCCTGGTCGCCGTCGATCAGGAGGAGCTCTCCCAGCCGATGGCGGCAGTTCTCGCAGGAGCTTAAGAACGAGGCGGTTGCGAAGGCGAGGCAGTTCTCGCAGGAGCTCAAGGCGGAGCTGCGGCGGTTTTCGTGGAGCCAGGGAGGATCTGAAACGGCGTTTTTGCCGCGAGATCTTAGGAAGCAGCGCGCTCAGCTTGAGCGCAACAGCTCCGGTACGAAGAAAGCGCTCCGTGGACTGAAATTCATTAGCAGTAAATCCAACGGCGCTGATGCCTGGAATGAGGTGCAAAGCAATTTCGATAGTCTTGCTAAAGACGGCTTTCTCTACCGCACCGATTTTGCGCAATGCATAGGAATGAAGGACTCTAAGGAGTTCGCACTGGAACTGTTCGATGCTCTGGGTCGTAGACGAAGAATCAGGGTTGAAAAGATCAGCAGAGACGAACTTACCGAATTCTGGTCGCAAATTACCGATCAAAGCTTTGATTCACGGCTCCAGATCTTCTTTGATATGGTGGACAAGAACGAAGATGGTAGAATAACCGAAGAAGAAGTGAAAGAGATCATTATGCTAAGCGCTTCAGCAAATAAGTTATCCAGATTGAAAGAGCAAGCCGAAGAATACGCAGCTCTGATCATGGAAGAGTTAGACCCTGAAAGACTTGGCTACATTGAGCTATGGCAATTGGAGACGCTTCTGTTACAAAAGGATACGTATCTGAACTACAGCCAAGCTCTAAGCTACACCAGTCAAGCTTTGAGTCAGAACCTACAAGGAATAAGGGGAAGAAGCCCGATACGTAGGATGAGCCGCAGGATGATCTACTATTTGCAAGAAAATTGGAAGAGGCTTTGGGTTTTAGCATTGTGGGTTTCAGTGATGATTGGGCTGTTTACGTGGAAGTTCATCGAGTACAAGCGAAAAAATGCTTATCATGTCATGGGTTACTGTCTCCTCGCGGCCAAAGGTGCTGCTGAAACACTCAAGTTCAACATGGCACTTATACTCTTTCCCGTCTGCAGAAATACCATAACGTGGCTCAGGTCCACCAAGTTGGCTTATATTGCACCTTTCGATGATAACATTAACTTTCATAAGACAATTGCTGCTGCAGTAGTGATTGGAGTGATACTTCATGCCGGGAATCACCTTGCTTGTGATTTTCCGAGACTTGTAAATTCGTCTGAAAAAATGTATGAGAAGTATTTGTACGGCGTATTTGGTGATCACAAACCCAGTTACGGAGACCTCATTAAGGGGGTTGAGGGCATGACTGGAATTCTCATGGTGATTTTGATGGCAATAGCGTTTACTCTTGCAACAAAATGGTTCAGAAGAAATCTTATTAAGCTTCCTAAACCGCTTAATAGGCTCACTGGTTTCAATGCATTCTGGTATTCACACCATCTATTTGTCATTGTCTATGTCCTGCTCATCATTCATGGTGTAAATCTTTACCTCGAGCGCAAATGGCACCTCCAGACGACATGGATGTATCTTGCAGTTCCAATCGTCCTTTATGTGGGAGAAAGAACGCTAAGATACTTCCGTTCTGGTTTCTATACAGTCCGTCTTATAAAGGTTGCCATTTATACTGGAAATGTTCTGACATTGCAAATGTCGAAGCCGCCTCAATTTCGTTACAAGAGTGGACAATACATGTTTGTACAATGTCCTGCTGTTTCTCCATTTGAGTGGCATCCGTTTTCTATTACCTCTGCTCCTGGCGATGACTACCTGAGTGTTCACATACGGCAACTGGGAGATTGGACACAGGAGCTCAAAAGGGTATTTTCTGCGGCCTGTGAGCCTCCCGTAGCTGGGAAGAGCGGCCTTCTCAGGGCTGATGAAACCACCAAGAAATGCTTACCAAAGCTAAGGATAGATGGACCTTACGGTGCGCCAGCGCAAGACTACAGAAACTATGATGTTCTACTACTTGTCGGTCTCGGGATTGGAGCAACACCTTTTATTAGCATTCTAAAAGATCTTCTCAACAATATTGTCAAAATGGAGGAGCTGGCGGACTCGGTCTCTGATTCCAGTAGAGGTTCAGACCTTAGCACTGCGACTGCAGATTCGCTGTCTTCTAATAAGATTTCTCCGAAACGGAAGAAGACACTTAAGACTACCAATTCTTATTTCTACTGGGTAACAAGGGAACAAGGTTCTTTCGATTGGTTTAAAGGGGTCATGAATGAAGTTGCTGAACTTGATCAAAGGGGTGTTATTGAGATGCACAACTACTTAACTAGCGTATACGAGGAAGGCGATGCCAGGTCCGCCCTCATTACTATGGTGCAAGCCCTCAACCATGCAAAAAATGGAGTTGATATTGTTTCTGGGACTAGGGTGAGAACTCATTTTGCTAGGCCAAACTGGAAGAAGGTTTTCTCTAAAATATGTTCCAAGCACTGCAATGGACGAATAGGGGTATTCTATTGTGGCGCACCAGTTTTGGCCAAAGAATTAAGCAGGCTTTGCTTCGAGTTCAACGAAAAAGGTCAAACGAAATTTGAGTTCCATAAGGAGCATTTCTGA 2784 0.4673 MNGAPKHERRWASDTVPDVAFVSGGTSPGTESYSVADEYVEVTLDVQDDHTIVLRGVESVTVVNVDEGCAASGNETPVSSAWSPSIRRSSPSRWRQFSQELKNEAVAKARQFSQELKAELRRFSWSQGGSETAFLPRDLRKQRAQLERNSSGTKKALRGLKFISSKSNGADAWNEVQSNFDSLAKDGFLYRTDFAQCIGMKDSKEFALELFDALGRRRRIRVEKISRDELTEFWSQITDQSFDSRLQIFFDMVDKNEDGRITEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGIRGRSPIRRMSRRMIYYLQENWKRLWVLALWVSVMIGLFTWKFIEYKRKNAYHVMGYCLLAAKGAAETLKFNMALILFPVCRNTITWLRSTKLAYIAPFDDNINFHKTIAAAVVIGVILHAGNHLACDFPRLVNSSEKMYEKYLYGVFGDHKPSYGDLIKGVEGMTGILMVILMAIAFTLATKWFRRNLIKLPKPLNRLTGFNAFWYSHHLFVIVYVLLIIHGVNLYLERKWHLQTTWMYLAVPIVLYVGERTLRYFRSGFYTVRLIKVAIYTGNVLTLQMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSAACEPPVAGKSGLLRADETTKKCLPKLRIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKMEELADSVSDSSRGSDLSTATADSLSSNKISPKRKKTLKTTNSYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFSKICSKHCNGRIGVFYCGAPVLAKELSRLCFEFNEKGQTKFEFHKEHF* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0253 927 CDD EFh 224 271 IPR002048 GO:0005509
Vra11g0253 927 SUPERFAMILY Riboflavin synthase domain-like 602 716 IPR017938 -
Vra11g0253 927 Pfam FAD-binding domain 602 716 IPR013112 GO:0016491
Vra11g0253 927 Gene3D Translation factors 591 682 - -
Vra11g0253 927 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 599 719 IPR017927 GO:0016491
Vra11g0253 927 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 720 927 IPR039261 -
Vra11g0253 927 PANTHER NADPH OXIDASE 28 927 - -
Vra11g0253 927 MobiDBLite consensus disorder prediction 760 779 - -
Vra11g0253 927 ProSiteProfiles EF-hand calcium-binding domain profile. 241 276 IPR002048 GO:0005509
Vra11g0253 927 Pfam Respiratory burst NADPH oxidase 145 244 IPR013623 GO:0004601|GO:0050664
Vra11g0253 927 PANTHER RESPIRATORY BURST OXIDASE2 28 927 - -
Vra11g0253 927 Coils Coil 272 292 - -
Vra11g0253 927 MobiDBLite consensus disorder prediction 760 782 - -
Vra11g0253 927 Gene3D - 714 927 IPR039261 -
Vra11g0253 927 MobiDBLite consensus disorder prediction 1 32 - -
Vra11g0253 927 CDD NOX_Duox_like_FAD_NADP 614 869 - -
Vra11g0253 927 ProSitePatterns EF-hand calcium-binding domain. 254 266 IPR018247 -
Vra11g0253 927 SFLD NADPH oxidase subgroup (NOX) 101 927 - -
Vra11g0253 927 SUPERFAMILY EF-hand 171 324 IPR011992 -
Vra11g0253 927 Coils Coil 742 762 - -
Vra11g0253 927 Pfam Ferric reductase like transmembrane component 404 560 IPR013130 -
Vra11g0253 927 Pfam Ferric reductase NAD binding domain 723 909 IPR013121 GO:0016491
Vra11g0253 927 Gene3D - 146 262 - -
Vra11g0253 927 PRINTS Cytochrome B-245 heavy chain signature 505 528 IPR000778 GO:0016020|GO:0016491
Vra11g0253 927 PRINTS Cytochrome B-245 heavy chain signature 705 718 IPR000778 GO:0016020|GO:0016491
Vra11g0253 927 PRINTS Cytochrome B-245 heavy chain signature 728 745 IPR000778 GO:0016020|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0253 Vra-Chr11 1738121 1747068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0253 9 927 Miscellaneous Gene Families AT1G64060 75.264 0.0 1476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0253 K13447 - gmx:100805517 1721.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0253 11 1738121 1747068 Vra11g0253 11 1738121 1747068 ECH
Vra11g0253 11 1738121 1747068 Vra7g3547 7 54815090 54824995 PCT