Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3478 ATGGCTTTGCAGGACAGGTTAGACAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCGACGCTGTCAAGCATTGCAGCAAGCCAAAAATCTGCCTCACATGGCTCGGCCAATGGAAAAAACGCGCCCCCTGCAGTGAAGTTTTCGAACGACACGGAGAGGCTTCAGCATATTAACAGCATACGTAAAGCCCCGGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGACAAGACAAGCTTTAACACCGGAGCAGATAAACCAGGCATGTTATGTTGACATAAAGGCTAACAAAGATGTCTTTGAGAATCTTAGGAAAAACCCGAAAGTGAATTATGATGGCCAACGATTCTCTTACAAGTCAAAGTACGGTCTTAAGGACAAAACAGAACTTCTTCAACTGATACGTAAGTATCCTGAAGGCCTTGCTGTTATTGACTTAAAGGATGCTTACCCCACTGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCGGGGCAGATTTGGCTGCTGTCCAACTTTGATTCACAGGAAGACATTGCCTACCCTAACGACCCCAAATTGCCGATTAAGGTGGATGATGATCTAAAACAGCTTTTCCGGAGTATTGAATTGCCTCGTGATATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCCGCCACCAACACTGCAAAGAGGAGGAGTGCAGCACAAATTCAAGGCATTTCTTCCAAGCCCAAGCCTAAGAAGAAGAAGAGTGAAATCAACAAGAGAACGAAGCTGACCAATGCTCATCTTCCAGAGCTTTTTCAAAACCTGAACAATTCCTGA 825 0.4473 MALQDRLDKFKKQQEKCQATLSSIAASQKSASHGSANGKNAPPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQALTPEQINQACYVDIKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKLPIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRSAAQIQGISSKPKPKKKKSEINKRTKLTNAHLPELFQNLNNS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3478 274 PIRSF TFIIE-beta 2 273 IPR016656 GO:0005673|GO:0006367
Vra7g3478 274 MobiDBLite consensus disorder prediction 21 37 - -
Vra7g3478 274 Pfam TFIIE beta subunit core domain 67 125 IPR003166 GO:0006367
Vra7g3478 274 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 273 IPR016656 GO:0005673|GO:0006367
Vra7g3478 274 MobiDBLite consensus disorder prediction 220 274 - -
Vra7g3478 274 MobiDBLite consensus disorder prediction 221 240 - -
Vra7g3478 274 Pfam TFA2 Winged helix domain 2 128 185 IPR040501 -
Vra7g3478 274 MobiDBLite consensus disorder prediction 21 49 - -
Vra7g3478 274 PANTHER BNAA02G21830D PROTEIN 1 273 - -
Vra7g3478 274 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 53 128 IPR003166 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3478 Vra-Chr7 54129158 54132563 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3478 K03137 - gmx:100802433 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0296 11 2101912 2105754 Vra7g3478 7 54129158 54132563 PCT