Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3477 ATGGAAAGTCCTGATATTGAAAAGTCTGAAGCAACCAATAAACAGATTAATAGTAACACAAATTGTAATTCCAAACAGCAGAGTGCAGAAAATGGTAACGAACGTCCTGAATGGTTACCTGATGGCTGGAACTTGGAAGTCAGAATCCGTAAGAGTGGTGTACACATGGGATCTGGATACAAGTGTTACATCGAACCATTAAAAGGATATAAATTCTTCTCCAAACCAGAGGTATTACGATATCTCGAAACTGTAAAGGACAGCAGTTGCACTTCCAAGAAGGGGAATAAAAGTAGTAAGATAAATACTCCAAATGGCAAGAACTGCACTTCCAAGGAGAAGAAATGCAGTAAAATGCAGACTCCAAACAACCAGAGCTGCAGTTCCAAGAAGGAGAAAAAATGTGCTGGCATGGAGTTTCCAAATGACGACAGTTGCACTCCCAAGGAGGAGAAGAAGGGCACTAACATGGATTTTCCAAACAACAACAGTTGTGCTCCCAAGAAGGAGAAGAATGGGAATAACTTGGATTCTCCCAACGATAGCAGTTGCCTGTCCAAGAAGGAGAAGATAGGCACTAACACGGACCCTCCAAAGGGCAGCAGTTGCACTCCGAAGAAGGAGAAGAATTTCACTAACATGGATTCTCCAATTGATGTTGTGGTTGAGAAGTCTATCCCGGAGGATTTACCACATGGGTGGTTAAAAGAATTGAAGATTTCGAAGAATGGCAAGGGCATTAGGAAAGATCCGTTTTATATTGATCCAGTGAGTGGATATGTATTCCGCTCTAAGAAGGATGTACTGCGGTATCTTGCATCTGGTGATATACGGTCATGTGCCTTTAAGCCAAGTAGAAGACAAATCCAAGATGAAGACAACATAACTTCACCACCTGCTGCCAAACGGCAGAAACTGAAGCAGTCTGCACCCACACAACAGCTTTCTGCAGCCACGGAAATACTTGATAAAAGCAGCTTAGAACCTAGTGCTAATAGCCCAAGGAAAAAGCAAAATGCAAATGTTTCGGCTAGAACGAAGGTTGTTTCTGTTCCTAAAGGTGATTCTGTTGCAAATATGCATTCACTAGAAGATGGAGCTGCAAACTCATGTGAACTGAAGAAATCATCTGACCCAGGTAGGTCAGCACTTTTGAAAAATGAATCCTTGAAGGAATCAGCAAAAGCACTTTTTTCAGATGATTTGCAAGAAGAGGACCGTGCTGTGAATGCAGTGGAGAATGGTAATGAGAAAAATCACGGTAACCAAAGCATATCCAAAATCAGGAAGGAGTTCAATGTACCTCAGCGGTCATCACCGAGACTTGCTGGAAGTAAATCTGTACAGTTGGTAAACAATGTGGTCAATGAACAGACACTTCAGGTTCCAAAAAGAAACACGAGGAAAAGTAGAAACACTCTAGATGTTGATATTTCTGTGGACCAAGCAGCTCCTAAAGAACAACCACATGAGCAAGAAACAGATAAAGTAGAAGACAAAAAGCCAGAAATTCAAATCAGCTCAAACAAATCAGGTAAAAAGAAAGAGCACAACCTTCCTCGTCGTGCTTCAAAACGATTAGCTGCCATTGAGCATGAGTCAATGAACTCTAAAGTGGAATTGCAGCAAAGTGAGTGTGGGCCAGCTACAGTGCTTGCTAATCAAGCCCCAATAAATGGAAAGTCAGCAAATAAAAGGAAAAAGTCAGCAGCACCTCATCTGGAGAAAAGGGGAAAAGAAGAGATGGATGATGAGAAAACAGAACCTCAGCTGTCCTTTGCATATCACTATTCGTGGTCCGACCCAAGCTTGGAATATGCAATCAATGCCCTCACTGGAAGAAGTGCCACTACAATCCCTGGAACCGATGTTCAAAACACTTCAGTTGGTACGGGAAGGAGCAACACTGCAGCCCCTGAAACTGATATTCAAAAAGCTTCAATTGACAATGGTACGGGAAGGAGCACCACTGAAGTCCCTGAAACCGGTATTCGAAAAGCTTCAGTTGACAGTTGTACGGGAAGGAGCACCACTGCAGTCCCGGATACTGATATACAAAAAGCTCCAATTGACAATGGTACGGGAAGTAGCACCACTGCAGTCCCTGATACTGATATGCAAAAAGCTCCAGTTGATAATGGTACGGGAAGTAGCACCACTGCAGTCCCTGATACTGATATGCAAAAAGCTCCAGTTGATAATGGTACGGGAAGTAGCACCACTGCAGTCCCTGATACTGATATTCAAAATCCTTTGGTTGACAATGGTAGGGCAAGGAGTACCAGTGAAGTCCCTGATACTGATATTCAAAAAGCTTATGTTGACAATGGTAGGGCAAGTAGTACCACTGCAGTCCTTGATACTGATATTCAAAAAGCTTCAGTTAACAATGGTACGGGAAGGAGCCCCGCGGCAGTCCCTGAAACTGATATTCAAAACACTTCAGTAAACATTGGCAGAAGTGCCAGTACAATTCTTGAAACTGATCTTCAAAAAGCTTTGATTGACAGTGTTAAGGGGAGTAGCGCCACTACAATCCCTGAAAACAGTGTTCAGAAAACGATGGTTGAAATGGAATCGGGAAGAAGCACCTCTACCGGACCTGAAACTGATATTCAAAAGTCTTTTATTGACAGTGTTACAGGAAGCAGGGATAGTGAAAACAATTTACATGACACTGTTACAGGAAGCAAGTATAGAAAATCCCAGGTGCGTTCTAATAAACCCAAGAGAACGAAAGAGCTCAAAGTACCTGTGCGGTTATCAAAGCGACTTGCTGGCCTGGAACCTGAGTTACCGCCTGCTGAAAGAGCTCTTGAATATTCCACTAGAAAATCATGTAAAGAAGAGCCAACAGCCACTGCTACTCTAACTAATGGAGTGTCTGATCATCACAACGCTAGGGAAGAAACCAAGCCTACTCTTCTTCAAGCTTCTGACAGTTTGAAAACAGAAGTACTTGGAGAATCATTAAAACGGAGTGAGAACTCATATGATGCCCAAACCGATCACAAGGAACAATTGGAGAAAGTTGAAGTTGAAAATGTTGGTGATGTGAGATCAGAGCCTAAGCTCCCCTTACCGTTTGGGGACTCTTGGTCAGATCCATGCCTAGAATTTGCCATCAAGACTCTCACTGGTGCTTTTCCAGTTGATGCTGGTGGAGAGATAATGCCTGCTTTGCCTCCTGGCTTTGATAATCCCCCATATAGGCAAGTGCATCGAACTGTGGTGACAGACATTAATCAAGATGCTCATGATAACTCGAACCAACCCTCGCTCAATAAGGAGCTTAATATGGTTAGTCAACCTGAGTTGAGGACCGGCTCCATCTCTTATGAAAATGCTTCTAACTTTACAACTAGGGAATCTTATCTTGATCAAGATAACATTCTTAAGAATTTTGATGTGGAACCCAGTCTCACTGGAAACATAACACAACCTGTGCATCATTCTTGGAATATAAACACACTAGCACATGAAGAGCCATTAAAGCAAAATGGACAGGCTGTTGAGGGTGGAATTGTTACAACGGAGCAGCAACTAATTGAAACTGGAGCTGTAAACCATGACAATTCCGAGTTACAGTATTGTGCACCGTTTATGAATTCTTGGTCAGACCCATGCTTAGAATTTGCATTTAAGACTCTTACAGGAGCGATACCAGTAGAGGAAAATTTAACACTCCAAGGATGTTTCCCGGAAACTGCTAACTATCATGAACGGAGGGATGGTGTCTCATTGTTGCCAGATTTCAGATCATCTAGCTTTTCACAAAGCGATTTCTCGTTTTTCCATGATACAGGGGTTAAGTCCATGACAGGGCAGCAATCATCAGTAAGCTCTCCATTCCTACCCTTGGAGAAAACAGGTCTTCAAGGTTTTGCTGGAGTTGATCCTCAAACACACTTTTCTCAGTGCAACAATAATTTTCAAAGGTAA 3942 0.4259 MESPDIEKSEATNKQINSNTNCNSKQQSAENGNERPEWLPDGWNLEVRIRKSGVHMGSGYKCYIEPLKGYKFFSKPEVLRYLETVKDSSCTSKKGNKSSKINTPNGKNCTSKEKKCSKMQTPNNQSCSSKKEKKCAGMEFPNDDSCTPKEEKKGTNMDFPNNNSCAPKKEKNGNNLDSPNDSSCLSKKEKIGTNTDPPKGSSCTPKKEKNFTNMDSPIDVVVEKSIPEDLPHGWLKELKISKNGKGIRKDPFYIDPVSGYVFRSKKDVLRYLASGDIRSCAFKPSRRQIQDEDNITSPPAAKRQKLKQSAPTQQLSAATEILDKSSLEPSANSPRKKQNANVSARTKVVSVPKGDSVANMHSLEDGAANSCELKKSSDPGRSALLKNESLKESAKALFSDDLQEEDRAVNAVENGNEKNHGNQSISKIRKEFNVPQRSSPRLAGSKSVQLVNNVVNEQTLQVPKRNTRKSRNTLDVDISVDQAAPKEQPHEQETDKVEDKKPEIQISSNKSGKKKEHNLPRRASKRLAAIEHESMNSKVELQQSECGPATVLANQAPINGKSANKRKKSAAPHLEKRGKEEMDDEKTEPQLSFAYHYSWSDPSLEYAINALTGRSATTIPGTDVQNTSVGTGRSNTAAPETDIQKASIDNGTGRSTTEVPETGIRKASVDSCTGRSTTAVPDTDIQKAPIDNGTGSSTTAVPDTDMQKAPVDNGTGSSTTAVPDTDMQKAPVDNGTGSSTTAVPDTDIQNPLVDNGRARSTSEVPDTDIQKAYVDNGRASSTTAVLDTDIQKASVNNGTGRSPAAVPETDIQNTSVNIGRSASTILETDLQKALIDSVKGSSATTIPENSVQKTMVEMESGRSTSTGPETDIQKSFIDSVTGSRDSENNLHDTVTGSKYRKSQVRSNKPKRTKELKVPVRLSKRLAGLEPELPPAERALEYSTRKSCKEEPTATATLTNGVSDHHNAREETKPTLLQASDSLKTEVLGESLKRSENSYDAQTDHKEQLEKVEVENVGDVRSEPKLPLPFGDSWSDPCLEFAIKTLTGAFPVDAGGEIMPALPPGFDNPPYRQVHRTVVTDINQDAHDNSNQPSLNKELNMVSQPELRTGSISYENASNFTTRESYLDQDNILKNFDVEPSLTGNITQPVHHSWNINTLAHEEPLKQNGQAVEGGIVTTEQQLIETGAVNHDNSELQYCAPFMNSWSDPCLEFAFKTLTGAIPVEENLTLQGCFPETANYHERRDGVSLLPDFRSSSFSQSDFSFFHDTGVKSMTGQQSSVSSPFLPLEKTGLQGFAGVDPQTHFSQCNNNFQR* 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3477 1313 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 220 287 IPR001739 GO:0003677
Vra7g3477 1313 MobiDBLite consensus disorder prediction 616 662 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 484 514 - -
Vra7g3477 1313 Pfam Methyl-CpG binding domain 230 275 IPR001739 GO:0003677
Vra7g3477 1313 Pfam Methyl-CpG binding domain 31 87 IPR001739 GO:0003677
Vra7g3477 1313 MobiDBLite consensus disorder prediction 157 211 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 616 775 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 459 521 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 948 962 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 285 359 - -
Vra7g3477 1313 SUPERFAMILY DNA-binding domain 226 279 IPR016177 GO:0003677
Vra7g3477 1313 MobiDBLite consensus disorder prediction 87 131 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 878 902 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 87 215 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 1 40 - -
Vra7g3477 1313 Gene3D - 195 347 - -
Vra7g3477 1313 Gene3D - 4 137 - -
Vra7g3477 1313 Coils Coil 991 1011 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 10 33 - -
Vra7g3477 1313 PANTHER OS04G0193200 PROTEIN 2 615 IPR038945 -
Vra7g3477 1313 PANTHER OS04G0193200 PROTEIN 785 1306 IPR038945 -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 573 587 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 669 767 - -
Vra7g3477 1313 SUPERFAMILY DNA-binding domain 21 91 IPR016177 GO:0003677
Vra7g3477 1313 MobiDBLite consensus disorder prediction 132 156 - -
Vra7g3477 1313 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 104 IPR001739 GO:0003677
Vra7g3477 1313 MobiDBLite consensus disorder prediction 555 587 - -
Vra7g3477 1313 CDD MBD 230 272 - -
Vra7g3477 1313 PANTHER OS04G0193200 PROTEIN 785 1306 - -
Vra7g3477 1313 PANTHER OS04G0193200 PROTEIN 2 615 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 878 983 - -
Vra7g3477 1313 MobiDBLite consensus disorder prediction 291 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3477 Vra-Chr7 54119080 54126392 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3477 - - vra:106768326 2545
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0297 11 2106369 2116929 Vra7g3477 7 54119080 54126392 PCT