Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3474 ATGGAGTGTTCTATAAAAAAGGCTTGCTGCACTCCCATTTCTACACACAAAAATAAACATTCTTTTCTAAAAATGAGTCTACCAAGGGGATTCTTCTTCCTCGTCGCTCTATTTTTCACCTTCACCACTGCTGCATATGCTGCAAGGTTTGATATCACAAACCGATGCGGCAACACTGTGTGGGCGGCGTCTGTGCCTGTTGGCGGTGGCAGACAATTAAACTCCGGCGATACCTGGTCGGTTGACGTGCCCGCAGGAACCACAGCAGCACGCATTTGGGCCCGAACCGGTTGCAACTTCGACGGTTCGGGTCGGGGTGGATGTCAGACCGGAGACTGTGGTGGAGTCCTGCAATGCACAGCATACGGTGCTCCTCCCAACACCCTAGCGGAATTCGCGCTGAACCAGTTCAACAATTTGGACTTCTTCGACATCTCCCTGGTCGACGGTTTTAACGTTCCTATGGAGTTCAGTCCAACGTCGAACGGATGCTCACGTGGCATATCATGCACTGCTGACATTAATGGACAGTGTCCCTCTCAGCTGAAGGCTCAAGGCGGTTGCAACAACCCATGCACCGTCTTCAAAACCAACGAATACTGTTGCAATTCCGGAAGCTGTTCTGCTACTGCTCTGTCCAAATTCTTCAAGGATAGGTGCCCCGATGCTTATAGTTACCCCAAAGATGATCAGACCAGCACTTTCACTTGCCCCGCTGGAACTAACTATAAGGTTGTCTTTTGCCCTTAA 750 0.5027 MECSIKKACCTPISTHKNKHSFLKMSLPRGFFFLVALFFTFTTAAYAARFDITNRCGNTVWAASVPVGGGRQLNSGDTWSVDVPAGTTAARIWARTGCNFDGSGRGGCQTGDCGGVLQCTAYGAPPNTLAEFALNQFNNLDFFDISLVDGFNVPMEFSPTSNGCSRGISCTADINGQCPSQLKAQGGCNNPCTVFKTNEYCCNSGSCSATALSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFCP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3474 249 PIRSF PR5 4 249 IPR001938 -
Vra7g3474 249 Pfam Thaumatin family 54 249 IPR001938 -
Vra7g3474 249 ProSitePatterns Thaumatin family signature. 104 119 IPR017949 -
Vra7g3474 249 Gene3D Thaumatin 48 249 IPR037176 -
Vra7g3474 249 PANTHER THAUMATIN-RELATED 32 249 - -
Vra7g3474 249 SMART tha2 50 249 IPR001938 -
Vra7g3474 249 PRINTS Pathogenesis-related protein signature 49 61 IPR001938 -
Vra7g3474 249 PRINTS Pathogenesis-related protein signature 69 78 IPR001938 -
Vra7g3474 249 PRINTS Pathogenesis-related protein signature 91 102 IPR001938 -
Vra7g3474 249 PRINTS Pathogenesis-related protein signature 104 133 IPR001938 -
Vra7g3474 249 PRINTS Pathogenesis-related protein signature 141 157 IPR001938 -
Vra7g3474 249 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Vra7g3474 249 ProSiteProfiles Thaumatin family profile. 47 249 IPR001938 -
Vra7g3474 249 PANTHER OS03G0233200 PROTEIN 32 249 IPR001938 -
Vra7g3474 249 CDD TLP-P 50 249 - -
Vra7g3474 249 SUPERFAMILY Osmotin, thaumatin-like protein 48 249 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3474 Vra-Chr7 54103818 54104654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3474 31 249 Receptor kinase-like Gene Family AT5G38280 35.918 6.57e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3474 - - vra:106767605 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0298 11 2118780 2119735 Vra7g3474 7 54103818 54104654 PCT