Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0298 ATGGCTCACTCACACTCACTTAGCTCCCTTCTCATCCTTGCCTCATTATCTCTCGCCACCGCTGCAAACTTCGAGATCGTCAACAACTGCCCGTACACGGTCTGGGCAGCAGCCAGCCCCGGCGGCGGGCGGCGCCTGGATCGCGGCCAGACGTGGAACCTGTGGGTGAACCCAGGCACTGCCATGGCCCGCATATGGGGCCGCACCGGGTGCAACTTCGACGGCAGTGGGCGCGGGCGGTGCCAGACCGGCGACTGCACCGGCGGCCTGAACTGCCAGGGCTGGGGCGTCCCTCCGAACACCCTGGCGGAGTTCGCCCTGAACCAATACAACAATCTGGACTTCTACGACATCTCCCTGGTTGATGGTTTCAACATCCCGATGGACTTCTACCCCGTGAACGGTGGGTGTCATAGAATAAGTTGCACTGCAGACATTAATGGGCAGTGCCCAGGCCCATTAAGGGCCCAAGGTGGATGCAACAACCCATGCACTGTGTTTAAGACGAACGAGTATTGCTGCACGAATGGGCAAGGAAGCTGTGGGCCGACAAGCTACTCTAAGTTCTTCAAGGAGAGATGCCGTGATGCTTACAGTTACCCTCAGGATGACCCTACAAGCACCTTTACATGCCCTGCTGGCTCTAATTACAGGGTTCTCTTCTGTCCTCTCGGGGAACCTCTTCTTCCTCTTCACATGCTTCCTAGTAATACCACAAATCAATACTGA 729 0.5693 MAHSHSLSSLLILASLSLATAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNPGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYNNLDFYDISLVDGFNIPMDFYPVNGGCHRISCTADINGQCPGPLRAQGGCNNPCTVFKTNEYCCTNGQGSCGPTSYSKFFKERCRDAYSYPQDDPTSTFTCPAGSNYRVLFCPLGEPLLPLHMLPSNTTNQY* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0298 242 ProSiteProfiles Thaumatin family profile. 21 223 IPR001938 -
Vra11g0298 242 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Vra11g0298 242 PRINTS Pathogenesis-related protein signature 42 51 IPR001938 -
Vra11g0298 242 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Vra11g0298 242 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Vra11g0298 242 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Vra11g0298 242 PRINTS Pathogenesis-related protein signature 213 222 IPR001938 -
Vra11g0298 242 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 12 223 - -
Vra11g0298 242 PANTHER OS03G0233200 PROTEIN 12 223 IPR001938 -
Vra11g0298 242 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Vra11g0298 242 SMART tha2 24 223 IPR001938 -
Vra11g0298 242 PIRSF PR5 1 241 IPR001938 -
Vra11g0298 242 Pfam Thaumatin family 28 223 IPR001938 -
Vra11g0298 242 Gene3D Thaumatin 21 224 IPR037176 -
Vra11g0298 242 SUPERFAMILY Osmotin, thaumatin-like protein 22 223 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0298 Vra-Chr11 2118780 2119735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0298 1 223 Receptor kinase-like Gene Family AT5G38280 36.255 8.26e-41 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0298 - - gmx:100240704 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0298 11 2118780 2119735 Vra11g0298 11 2118780 2119735 ECH
Vra11g0298 11 2118780 2119735 Vra7g3474 7 54103818 54104654 PCT