Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0657 ATGGCAAGTCAAACCGGTGCCTCCCGAAGAAGTATTTCCTCGACGAGGAAAGCCTCCGAATCAGGAGTGTCTCATGCTACTTCTCGAAAATCAATTACCTCTTTGCGACCTGTGGCATTAGCAGGAGAGCGGACTGTGAAATCGTTGCGACTTACAAAGGCCCTGACAGTACCTGAAACAACAACCATCTATGAAGCATGTCGTCGGATGGCTGCCCGTAGAGTGGATGCTCTATTACTAACTGATTCTAATGCTTTACTCTGTGGAATCCTCACGGACAAGGATATTGCAACAAGAGTTATTGCCAAAGAGATTAACATTGAAAACACACCAGTTTCCAAAGTCATGACTAGGAATCCAGTATTTGTCCTTTCTGAAACTCTTGCTGCGGAAGCCCTTCAAAAGATGGTGCAAGGGAGATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTTTGCATGACGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTCGAAAAACACTGGGGAACATCAGAGTCTAATACATCATTCATCGAAACTCTTCGAGAGCAAATATTCAAGCCATCATTGTCTACAATAATTTCTGAGAATTCAAAGCTAGTAACAGTATCACCAACGGACTCAGTTCTGACAACAACAAAGAAGATGGTTGAATTTCATGAGAGTTGCGCTGTTGTGACAGTTAATGACAAACCTCATGGCATCTTTACTTCAAAAGATATCTTGTTGCGGGTAATTGCACAAAATCTTTCTCCTGAATCAACTCCCATTGAGAAGGTTATGACACCAAATCCAGAATGTGTAGTAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGACGGGAAATTTTTGCATCTTCCTGTGATTGATAGAGATGGCAGTGTAGTTGCTGTGGTCGATGTGATCCATGTTACTCATGCTGCCGTGGCGACAGTAAGTCAGGTTGGGAATAATGAAGCTGCAACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAACTCCAAATGATGATGATGACGATACACGAAGTGACAGCTCCTTGAAATTGGCTTCTGATGGAGGAGAAACGGGGAGGTCCATTCCTTATCTTTCATCAAGCATGGCTAATACATTTTCCTTCAAAATACAAGATAAAAAGGGCAGAATGCACAGATTCACATGTGATACCCGGAGCATGAAAGAGGTTATAACTTCAATCATTCAGAGACTTGGTGATGATATTGATCCTAACAACGTACCCCAAATTCTGTATGAAGATGAAGATCATGATAAAGTTGTATTGGCTTCAGACAATGATCTTGCAACTGCTGTGGATCACGCCCGGACAGCTGGTTTGAAGGGGTTGAAATTGCATTTAGACTACGCAGGACCACGTGGTAATGGGAAAAGTTCGCGTTCAGGAAGTTATGCTTATTCAGATGCATGGGCCTCTGCATATAGTGCCGCTGCAGCTGGAGCTGCACTTGTTGCTGGCTTAGGCATATTAACATACTTGAAGCGAGTTTGA 1590 0.4321 MASQTGASRRSISSTRKASESGVSHATSRKSITSLRPVALAGERTVKSLRLTKALTVPETTTIYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAKEINIENTPVSKVMTRNPVFVLSETLAAEALQKMVQGRFRHLPVVENGEVLALLDIAKCLHDAIARMERAAEKGKAIAAAVEGVEKHWGTSESNTSFIETLREQIFKPSLSTIISENSKLVTVSPTDSVLTTTKKMVEFHESCAVVTVNDKPHGIFTSKDILLRVIAQNLSPESTPIEKVMTPNPECVVIDTPIVDALHTMHDGKFLHLPVIDRDGSVVAVVDVIHVTHAAVATVSQVGNNEAATTLMQRFWDSAMALTPNDDDDDTRSDSSLKLASDGGETGRSIPYLSSSMANTFSFKIQDKKGRMHRFTCDTRSMKEVITSIIQRLGDDIDPNNVPQILYEDEDHDKVVLASDNDLATAVDHARTAGLKGLKLHLDYAGPRGNGKSSRSGSYAYSDAWASAYSAAAAGAALVAGLGILTYLKRV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0657 529 CDD CBS_pair_MUG70_1 51 167 - -
Vra5g0657 529 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g0657 529 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 21 517 - -
Vra5g0657 529 SMART cbs_1 53 101 IPR000644 -
Vra5g0657 529 SMART cbs_1 119 163 IPR000644 -
Vra5g0657 529 SMART cbs_1 286 334 IPR000644 -
Vra5g0657 529 SMART cbs_1 221 268 IPR000644 -
Vra5g0657 529 ProSiteProfiles CBS domain profile. 216 275 IPR000644 -
Vra5g0657 529 Gene3D - 397 480 - -
Vra5g0657 529 MobiDBLite consensus disorder prediction 360 383 - -
Vra5g0657 529 CDD PB1_MUG70 399 483 - -
Vra5g0657 529 Gene3D - 21 181 IPR046342 -
Vra5g0657 529 Gene3D - 191 345 IPR046342 -
Vra5g0657 529 SUPERFAMILY CBS-domain pair 43 160 IPR046342 -
Vra5g0657 529 ProSiteProfiles CBS domain profile. 116 174 IPR000644 -
Vra5g0657 529 ProSiteProfiles CBS domain profile. 283 344 IPR000644 -
Vra5g0657 529 SUPERFAMILY CAD & PB1 domains 390 480 - -
Vra5g0657 529 Pfam PB1 domain 398 481 IPR000270 GO:0005515
Vra5g0657 529 ProSiteProfiles PB1 domain profile. 396 483 IPR000270 GO:0005515
Vra5g0657 529 Pfam CBS domain 219 265 IPR000644 -
Vra5g0657 529 Pfam CBS domain 280 329 IPR000644 -
Vra5g0657 529 Pfam CBS domain 51 98 IPR000644 -
Vra5g0657 529 Pfam CBS domain 112 156 IPR000644 -
Vra5g0657 529 SMART PB1_new 398 483 IPR000270 GO:0005515
Vra5g0657 529 ProSiteProfiles CBS domain profile. 50 107 IPR000644 -
Vra5g0657 529 SUPERFAMILY CBS-domain pair 221 333 IPR046342 -
Vra5g0657 529 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 21 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0657 Vra-Chr5 10314953 10320401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0657 - - gmx:100785816 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0657 5 10314953 10320401 Vra7g3472 7 54087147 54094518 PCT