LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g3464	ATGGGCGAGGAAGAAAAAAAACCAGAGGAAACCAAAGTGGAGGAGAAAAAAGCAGAGGAACCCAAGGAGGAGAAGAAACCCGAGCAAGACAAAAAACCGGAGGAGTCAAAAGATGAAAAGGAATCCAAGGAGGAGGAATCTGCGCCGCCACCGCCAGAAATCGTGCTTAGAGTCTTCATGCATTGCGAGGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGGGTGGAAGATATTCTCACGGATTGCAAGTCTCACAAGGTGGTGGTGAAAGGCGAAAAGGCGGATCCGCTGAAGGTTCTAGAAAGAGTACAGAGGAAGAGCCACAGAAAGGTTGAGCTTCTCTCTCCGATCCCAAAACCACCACCGGAAGAAGAGAAAAAGCCCGAAGAGGAAGAGAAGCCGAAACCAGAGGAGAAGAAAGAAGAGGTTATCACAGTGGTTCTGAAAGTCCACATGCATTGTGAGGCGTGCTCGCAGGAAATCAAGAGACGAATCGAGAAAATGAAAGGGGTGGAGTCAGTGGAAGCAGATCTGAAGAGTTCAGAGGTGAGCGTGAAGGGGGTGTTCGAGGCAGAGAAGCTGGTGGAGCACGTGTCGAAGAGGACAGGGAAGCATGCAGTGATAGTGAAGCAGGAGGCAGAGAAGAAGGAGGGAGAAGGAAAAGAAGAGAGCAAAGGGGAGAAGAAGGGAGAGGAAGGTGAGAAGAAGGAGAAAGATAACGGTGACGGAGAAGAGAAGAAGGAGAAGAAAGAAGGAGACGGTGAAGGAAAAGCAGAAGAAGGAGGCACAGAAGAAAACACAGTAATGGAGCTGAAAAAAAGTGAGTATTATTACAACCCTCCAAGGTATGGAATGGAGTTCTATGCATACCCTGGACCAGCTTACCCTCCCCAGATCTTCAGTGATGAGAACCCCAATGCCTGTTCTGTCATGTAA	948	0.4926	MGEEEKKPEETKVEEKKAEEPKEEKKPEQDKKPEESKDEKESKEEESAPPPPEIVLRVFMHCEGCARKVRRSLKGFPGVEDILTDCKSHKVVVKGEKADPLKVLERVQRKSHRKVELLSPIPKPPPEEEKKPEEEEKPKPEEKKEEVITVVLKVHMHCEACSQEIKRRIEKMKGVESVEADLKSSEVSVKGVFEAEKLVEHVSKRTGKHAVIVKQEAEKKEGEGKEESKGEKKGEEGEKKEKDNGDGEEKKEKKEGDGEGKAEEGGTEENTVMELKKSEYYYNPPRYGMEFYAYPGPAYPPQIFSDENPNACSVM*	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g3464	315	MobiDBLite	consensus disorder prediction	210	276	-	-
	Vra7g3464	315	Gene3D	-	51	123	-	-
	Vra7g3464	315	ProSiteProfiles	Heavy-metal-associated domain profile.	60	116	IPR006121	GO:0046872
	Vra7g3464	315	CDD	HMA	151	210	IPR006121	GO:0046872
	Vra7g3464	315	Gene3D	-	144	213	-	-
	Vra7g3464	315	MobiDBLite	consensus disorder prediction	1	50	-	-
	Vra7g3464	315	MobiDBLite	consensus disorder prediction	210	275	-	-
	Vra7g3464	315	SUPERFAMILY	HMA, heavy metal-associated domain	145	215	IPR036163	GO:0046872
	Vra7g3464	315	MobiDBLite	consensus disorder prediction	108	145	-	-
	Vra7g3464	315	Pfam	Heavy-metal-associated domain	55	110	IPR006121	GO:0046872
	Vra7g3464	315	Pfam	Heavy-metal-associated domain	152	209	IPR006121	GO:0046872
	Vra7g3464	315	ProSiteProfiles	Heavy-metal-associated domain profile.	156	204	IPR006121	GO:0046872
	Vra7g3464	315	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	315	-	-
	Vra7g3464	315	MobiDBLite	consensus disorder prediction	1	54	-	-
	Vra7g3464	315	SUPERFAMILY	HMA, heavy metal-associated domain	56	110	IPR036163	GO:0046872
	Vra7g3464	315	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	315	IPR044577	GO:0046872
	Vra7g3464	315	CDD	HMA	60	116	IPR006121	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g3464	Vra-Chr7	54027448	54029379	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g3464	-		-	gmx:100796289	329.717

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g0648	5	10098138	10100143	Vra7g3464	7	54027448	54029379	ECH
	Vra7g3464	7	54027448	54029379	Vra7g3464	7	54027448	54029379	ECH
	Vra7g3464	7	54027448	54029379	Vra5g0648	5	10098138	10100143	PCT