Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0648 ATGGGGGAGGAGGAAAAGAAACCAGAGGAACCCAAGGCGGAGGAAAAAAAGCCAGAAGAACCAGAAAAAAAACAAGAGGAGAAGAAGAAGGAAGAAACAGCGGGAGAGAAAAAACCAGAAGTGGTGGAGAAGGAACAAGTGACTCCTCCACCGCCACCGCCACCGCCACCGGCCGAGATTGTGCTCAAAGTGTTCATGCATTGCGAGGGTTGCGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGTGTCGAAGAAGTGCTCACCGACTGCAAATCTCACAACGTGGTTATCAAGGGAGAGAAAGCGGATCCTCTAAAGGTTTTGGAGAGAATACAGAGGAAGAGTCACAGAAAGGTGGAGCTTCTCTCTCCGATCCCGAAACCTCCAGAGGAGAAGAAGGTCCCGGAAGAAGAAAAACCAAAGCCCAAGGTCCAAGAGAAAGTACAAGAGCCACCGATTGTGACGCTTCTGAAAATTCACATGCATTGCGAGGCTTGCTCACTGGAAATCAAGAAACGCATACAGAGAATGAAGGGAGTGGAATCAGCTGATCCCGATCTGAAGAACTCAGTGGTGAGTGTGAAGGGCGTGTACGATCCAGAGAAGTTGGTTGAGTACGTGTACAAGAGAACTGGGAAGCACGCAGTGATCGTGAAGCTGGAGGCAGAAAAGAAAGAGGAGAAGAAAGAGGAGAAGGTGGAGGAGGTGGAGAAAAAGGTGGAGGAGGTTGAAAAAGAGAAGACTGGTGAAGGAGAAGAAAACAAGGAAAAGAAAGAGGAAGAAGAAGAAGAAGCAAAGGGTGAGACCAAGGCAGAGGAAGCAGACAACGTTGTTCCAGAGGTGAAGATTAATGAATACTTCCATAACCCACCAAGCTATGGCATGGAGGTGTATGCATATCCTGCACACCCTGTATACCCTGCATACCCTGCGTATTTCCATGCCTACCCTCCCCAGATATTCAGCGATGAGAACCCAAATGCCTGCACTGTCATGTAA 1005 0.4905 MGEEEKKPEEPKAEEKKPEEPEKKQEEKKKEETAGEKKPEVVEKEQVTPPPPPPPPPAEIVLKVFMHCEGCARKVRRSLKGFPGVEEVLTDCKSHNVVIKGEKADPLKVLERIQRKSHRKVELLSPIPKPPEEKKVPEEEKPKPKVQEKVQEPPIVTLLKIHMHCEACSLEIKKRIQRMKGVESADPDLKNSVVSVKGVYDPEKLVEYVYKRTGKHAVIVKLEAEKKEEKKEEKVEEVEKKVEEVEKEKTGEGEENKEKKEEEEEEAKGETKAEEADNVVPEVKINEYFHNPPSYGMEVYAYPAHPVYPAYPAYFHAYPPQIFSDENPNACTVM* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0648 334 MobiDBLite consensus disorder prediction 120 148 - -
Vra5g0648 334 ProSiteProfiles Heavy-metal-associated domain profile. 66 122 IPR006121 GO:0046872
Vra5g0648 334 Coils Coil 219 277 - -
Vra5g0648 334 SUPERFAMILY HMA, heavy metal-associated domain 156 219 IPR036163 GO:0046872
Vra5g0648 334 MobiDBLite consensus disorder prediction 229 279 - -
Vra5g0648 334 ProSiteProfiles Heavy-metal-associated domain profile. 155 209 IPR006121 GO:0046872
Vra5g0648 334 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 334 - -
Vra5g0648 334 CDD HMA 66 122 IPR006121 GO:0046872
Vra5g0648 334 MobiDBLite consensus disorder prediction 120 149 - -
Vra5g0648 334 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 334 IPR044577 GO:0046872
Vra5g0648 334 Pfam Heavy-metal-associated domain 62 116 IPR006121 GO:0046872
Vra5g0648 334 Pfam Heavy-metal-associated domain 161 215 IPR006121 GO:0046872
Vra5g0648 334 Gene3D - 57 129 - -
Vra5g0648 334 MobiDBLite consensus disorder prediction 1 58 - -
Vra5g0648 334 SUPERFAMILY HMA, heavy metal-associated domain 61 116 IPR036163 GO:0046872
Vra5g0648 334 MobiDBLite consensus disorder prediction 1 44 - -
Vra5g0648 334 CDD HMA 162 217 IPR006121 GO:0046872
Vra5g0648 334 Gene3D - 155 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0648 Vra-Chr5 10098138 10100143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0648 - - gmx:100787932 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0648 5 10098138 10100143 Vra7g3464 7 54027448 54029379 ECH
Vra5g0648 5 10098138 10100143 Vra5g0648 5 10098138 10100143 ECH
Vra7g3464 7 54027448 54029379 Vra5g0648 5 10098138 10100143 PCT