Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3145 ATGAGTAGTACCGAGAGTAAGAAAAGGTTCAATCCTATTCATCTTGAAGATGCTGCAGTGGACATGTTAAACCATGTGGTGAAGGTGAAGGAGAAGATGGGCTGGATTTCACTCCTCCTTCCTCTCATATTCATTGCTTGGGCTATTCACAGATGGCTATTTTCTTTCTCCAATTGGCTTTCTCTTGCTCTTGCTCTGTGGGCATCTATGCAATATGGGAAGTATCAGCGCAAACTGCTGGAGGAAGACTTGAATAAGAAATGGAATCGAATCCTACTCCAAACCTCGCCAGTGACACCATTGGAACACTGCGACTGGTTGAATCTGCTGTTGACACAAATATGGTCCAACTATTTTAACCCCAAGTTCTCAAGAAGGTTATCAGCCATAGTTGAAAAACGTTTAAAGCTTCGAAAACCAAGATTTATTGAAAAAGTTGAGGTGCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCGGGTGATCAGCGAGTCCTGAAATTGAGTTTTGATTGGGACACAAGCGAGATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATCGTGATTAACAATCTTCATATAAAGGGTGAGCTTTTGGTGACTCCAATTCTAGATGGAAAGGCACTTCTGTATTCATTTTCGTCCACACCTGAGGTGAGAATAGGAATTGCCTTTGGAAGCGGCGCAAGCCAATCAGCCACCGAGTTGCCCGGGGTTTCTCCATGGCTGGATAAACTTTTTACTGATACGTTGGTTAAAACCATGGTGGAACCTCGACGTCGTTGTTTCAGTTTGCCTGTGGTTAATTTGAGGAAAACTGCTGTTGGAGGCGTTATATACGTGTCAGTGATTTCAGCAGACAAACTTTCTTGGAGTTGCTTCAAGAGTAGCCCATCTTTGAGGCAACAGAATAGCACAACCAATGGATTATCAGAAAGCAACCTGGATGACAAGGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGTCATGGTTCAAATCCAACGTGGGATACTACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGCGTCCTTCTAGCGGTGTAAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATTGTGAAGATGATTCAACACTAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAACATGCGAAGTTTTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGTACCAACTCAGCAGAGTTAAAGGTGAAGATTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCACATAGCTTGAACAACCTCCGTTCTAATTCTCAACGATCACTTATTGGATCATCAACTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACAATTGTGGAAGCAAAGGATCTCGTTACGAAAGACAGATCTGGAAAAGTTAGTCCATACGTCAAATTGCAATATGGAAAGGTTGGTAAGAGAACAAAGGTTGCTCCTTCTACTACTACAAATCCTTCCTGGAATGAATCATTTGATTTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTCAGTGAAGAAATTTTTGGAGATGAAAATATTGGTACTGCAAATGTAAATTTGGAAGGACTGGGGGACGGGTCTATCAAGGATGAATGGATCCCACTTGAAGGAGTGAGTTCTGGTGAATTAAGACTTAAAATTGAAGTAGTTAGGGTGGACGACCAAGAAGGATCAAGGAGTTCGGCCAATGGTTGGATAGAACTTGTTGTGATTGAAGCAAGAGACCTTATTGCTGCCGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTGAACTATGGGAACTTGAAGCGGAGGACAAAGGTTATACACAAAACTCTCAACCCTCGTTGGAACCAAACCTTAGAGTTCCTTGACGATGGTAGTTCCCTGACACTGCATGTTAGGGACCATAATGCTTTACTACCCACATCAAGTATAGGGGAATGTGTTGTAGAATATCAAAGGTTACCTCCAAACCAGATGTCTGACAAATGGATACCTCTCCAAGGGGTTAAAAGTGGCGAGATACACATCCAAATTACCAGAAAAGTTCCAGAAATGCAAACAAGAAGTTCCCTAGACTCTCAACCATCTTCTTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGTTGAAAAAGTTTCGATCATTAATAGAGGATGGAAATCTTGAAGGACTGACATCAACTTTGAGCGAGTTAGAAAGTCTAGAGGATACAATGGAAGGGTACGTAGCACAGCTGGAGACCGAGCAAATGCTTCTTCTCAGCAAAATAAATGAACTGGGTCAAGAGATCCTCAATTCTTCTTCTTCCCTCTCTAGCAGTCCTTCTCAAAATGGAAATTAA 2487 0.4182 MSSTESKKRFNPIHLEDAAVDMLNHVVKVKEKMGWISLLLPLIFIAWAIHRWLFSFSNWLSLALALWASMQYGKYQRKLLEEDLNKKWNRILLQTSPVTPLEHCDWLNLLLTQIWSNYFNPKFSRRLSAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGDQRVLKLSFDWDTSEMSILMLAKLSVGTARIVINNLHIKGELLVTPILDGKALLYSFSSTPEVRIGIAFGSGASQSATELPGVSPWLDKLFTDTLVKTMVEPRRRCFSLPVVNLRKTAVGGVIYVSVISADKLSWSCFKSSPSLRQQNSTTNGLSESNLDDKDLQTFVEVEVEELTRRTGLSHGSNPTWDTTFNMVLHDNTGIVRFNLYERPSSGVKCDHLASCEIKMRHCEDDSTLMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSAELKVKIVVKEWQFSDGSHSLNNLRSNSQRSLIGSSTLLSKTGRKLKITIVEAKDLVTKDRSGKVSPYVKLQYGKVGKRTKVAPSTTTNPSWNESFDFDENDGDEYLNVKCFSEEIFGDENIGTANVNLEGLGDGSIKDEWIPLEGVSSGELRLKIEVVRVDDQEGSRSSANGWIELVVIEARDLIAADLRGTSDPYVRVNYGNLKRRTKVIHKTLNPRWNQTLEFLDDGSSLTLHVRDHNALLPTSSIGECVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRSSLDSQPSSLSKSHQIPTQMREMLKKFRSLIEDGNLEGLTSTLSELESLEDTMEGYVAQLETEQMLLLSKINELGQEILNSSSSLSSSPSQNGN* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3145 828 MobiDBLite consensus disorder prediction 730 750 - -
Vra7g3145 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 485 601 IPR035892 -
Vra7g3145 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 613 725 IPR035892 -
Vra7g3145 828 Gene3D C2 domain 602 727 IPR035892 -
Vra7g3145 828 Gene3D C2 domain 475 601 IPR035892 -
Vra7g3145 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 288 403 IPR035892 -
Vra7g3145 828 CDD C2 487 585 - -
Vra7g3145 828 CDD C2 616 712 - -
Vra7g3145 828 PANTHER PLANT SYNAPTOTAGMIN 5 822 - -
Vra7g3145 828 SMART C2_3c 293 411 IPR000008 -
Vra7g3145 828 SMART C2_3c 615 709 IPR000008 -
Vra7g3145 828 SMART C2_3c 486 582 IPR000008 -
Vra7g3145 828 Pfam C2 domain 486 585 IPR000008 -
Vra7g3145 828 Pfam C2 domain 322 403 IPR000008 -
Vra7g3145 828 Pfam C2 domain 616 712 IPR000008 -
Vra7g3145 828 ProSiteProfiles C2 domain profile. 465 583 IPR000008 -
Vra7g3145 828 Coils Coil 780 811 - -
Vra7g3145 828 ProSiteProfiles C2 domain profile. 589 710 IPR000008 -
Vra7g3145 828 PANTHER OS01G0128800 PROTEIN 5 822 - -
Vra7g3145 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 100 281 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3145 Vra-Chr7 51228626 51235275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3145 458 750 Lipid Metabolism Gene Families AT3G57880 25.872 9.41e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3145 - - gmx:100805496 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0606 1 7040153 7047274 Vra7g3145 7 51228626 51235275 ECH
Vra7g3145 7 51228626 51235275 Vra7g3145 7 51228626 51235275 ECH
Vra7g3145 7 51228626 51235275 Vra1g0606 1 7040153 7047274 PCT